miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24747 3' -57 NC_005264.1 + 133955 0.66 0.891447
Target:  5'- --gCUUGGcCGGgGUCUUCGCGGUGGc -3'
miRNA:   3'- gggGAGUC-GCCaUAGAAGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 54188 0.66 0.887423
Target:  5'- uCgCCUCGGCGGUAagguacgauugCGCGGgGGAu -3'
miRNA:   3'- -GgGGAGUCGCCAUagaa-------GCGCCgCUU- -5'
24747 3' -57 NC_005264.1 + 146775 0.66 0.884696
Target:  5'- gCgCCgcgCGGCGGUucUCggUGCGGCGGu -3'
miRNA:   3'- -GgGGa--GUCGCCAu-AGaaGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 6996 0.66 0.884696
Target:  5'- cCUCCUCGGCGuGgcc---CGCGGCGGc -3'
miRNA:   3'- -GGGGAGUCGC-CauagaaGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 111022 0.66 0.884696
Target:  5'- aCCCCUCuccugguucgaAGCGGUGgc-UCGC-GCGGAc -3'
miRNA:   3'- -GGGGAG-----------UCGCCAUagaAGCGcCGCUU- -5'
24747 3' -57 NC_005264.1 + 126023 0.66 0.884696
Target:  5'- cCUCCUCGGCGuGgcc---CGCGGCGGc -3'
miRNA:   3'- -GGGGAGUCGC-CauagaaGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 31685 0.66 0.870542
Target:  5'- gCUCUCGGCGGgg-CUgcccgccaaaggUCGCGcGCGGGg -3'
miRNA:   3'- gGGGAGUCGCCauaGA------------AGCGC-CGCUU- -5'
24747 3' -57 NC_005264.1 + 150711 0.66 0.870542
Target:  5'- gCUCUCGGCGGgg-CUgcccgccaaaggUCGCGcGCGGGg -3'
miRNA:   3'- gGGGAGUCGCCauaGA------------AGCGC-CGCUU- -5'
24747 3' -57 NC_005264.1 + 157848 0.67 0.85555
Target:  5'- cUCCCUUcGC--UGUCUUCGCGGCa-- -3'
miRNA:   3'- -GGGGAGuCGccAUAGAAGCGCCGcuu -5'
24747 3' -57 NC_005264.1 + 133364 0.67 0.814721
Target:  5'- gCCCuccucgacgaCUCGGCGaGaGUCaUCGCGGCGGc -3'
miRNA:   3'- -GGG----------GAGUCGC-CaUAGaAGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 50610 0.68 0.806037
Target:  5'- gCCgUCGGCGGUAccguacUCgaacCGCGGCGu- -3'
miRNA:   3'- gGGgAGUCGCCAU------AGaa--GCGCCGCuu -5'
24747 3' -57 NC_005264.1 + 68218 0.68 0.797199
Target:  5'- aUCCUCAGCGaugacGUAUCcgCGCcGGCGGc -3'
miRNA:   3'- gGGGAGUCGC-----CAUAGaaGCG-CCGCUu -5'
24747 3' -57 NC_005264.1 + 10171 0.7 0.702214
Target:  5'- -gCCUCGGCGaGUAUCUugUCGuCGGCa-- -3'
miRNA:   3'- ggGGAGUCGC-CAUAGA--AGC-GCCGcuu -5'
24747 3' -57 NC_005264.1 + 132098 0.7 0.6621
Target:  5'- uCCCCUgAGCGGc-UCUUUGCGcGgGAAg -3'
miRNA:   3'- -GGGGAgUCGCCauAGAAGCGC-CgCUU- -5'
24747 3' -57 NC_005264.1 + 6460 0.72 0.571206
Target:  5'- aCUCCUCGGCGG------CGCGGCGAAc -3'
miRNA:   3'- -GGGGAGUCGCCauagaaGCGCCGCUU- -5'
24747 3' -57 NC_005264.1 + 125487 0.72 0.571206
Target:  5'- aCUCCUCGGCGG------CGCGGCGAAc -3'
miRNA:   3'- -GGGGAGUCGCCauagaaGCGCCGCUU- -5'
24747 3' -57 NC_005264.1 + 81613 0.72 0.551296
Target:  5'- aCCCUUAGgCGGUGUCcaagUCGCGaCGAAc -3'
miRNA:   3'- gGGGAGUC-GCCAUAGa---AGCGCcGCUU- -5'
24747 3' -57 NC_005264.1 + 28305 0.73 0.52088
Target:  5'- gCCUUCuGCGGgcgcgucuuugagUAUCUUUGCGGCGGc -3'
miRNA:   3'- gGGGAGuCGCC-------------AUAGAAGCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 150215 0.73 0.51217
Target:  5'- -gCCUC-GCGGUauaGUCUUgCGCGGCGAc -3'
miRNA:   3'- ggGGAGuCGCCA---UAGAA-GCGCCGCUu -5'
24747 3' -57 NC_005264.1 + 83150 0.74 0.455804
Target:  5'- gCCCUCA-UGGUGUCUgUCGCGGgGAu -3'
miRNA:   3'- gGGGAGUcGCCAUAGA-AGCGCCgCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.