miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24747 5' -56.2 NC_005264.1 + 24366 0.66 0.914341
Target:  5'- gCUCUggcaugACCGGCUucgcGGcucccccgGCGGCGAGGu -3'
miRNA:   3'- -GAGGa-----UGGCCGA----UCua------CGUCGCUCCu -5'
24747 5' -56.2 NC_005264.1 + 71224 0.66 0.914341
Target:  5'- -aCCUcCCGG--AGGUGCAGCaGAGGc -3'
miRNA:   3'- gaGGAuGGCCgaUCUACGUCG-CUCCu -5'
24747 5' -56.2 NC_005264.1 + 106725 0.66 0.902157
Target:  5'- -gCCUAgUGGUcgacaaGGAUGguGCGGGGGa -3'
miRNA:   3'- gaGGAUgGCCGa-----UCUACguCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 79204 0.66 0.893072
Target:  5'- uUCCgACCcuggGGCUAGGcugcgugcaggcgGCGGCGGGGGu -3'
miRNA:   3'- gAGGaUGG----CCGAUCUa------------CGUCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 6653 0.66 0.882142
Target:  5'- gUCCggaagcuCCGGCagAGAUccuggcgccaGCAGCGAGGc -3'
miRNA:   3'- gAGGau-----GGCCGa-UCUA----------CGUCGCUCCu -5'
24747 5' -56.2 NC_005264.1 + 125680 0.66 0.882142
Target:  5'- gUCCggaagcuCCGGCagAGAUccuggcgccaGCAGCGAGGc -3'
miRNA:   3'- gAGGau-----GGCCGa-UCUA----------CGUCGCUCCu -5'
24747 5' -56.2 NC_005264.1 + 52626 0.66 0.880736
Target:  5'- aUCgUGCCGGUgauacgggaaggAGAUGUggccgaugacucGGCGGGGAa -3'
miRNA:   3'- gAGgAUGGCCGa-----------UCUACG------------UCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 70187 0.67 0.875021
Target:  5'- cCUCUUugCGGCgcgAGGgccacGCGGCaGGGAu -3'
miRNA:   3'- -GAGGAugGCCGa--UCUa----CGUCGcUCCU- -5'
24747 5' -56.2 NC_005264.1 + 122098 0.67 0.867683
Target:  5'- gUCUcGCCGcGaCUGGcgGCGGCcGAGGAc -3'
miRNA:   3'- gAGGaUGGC-C-GAUCuaCGUCG-CUCCU- -5'
24747 5' -56.2 NC_005264.1 + 3071 0.67 0.867683
Target:  5'- gUCUcGCCGcGaCUGGcgGCGGCcGAGGAc -3'
miRNA:   3'- gAGGaUGGC-C-GAUCuaCGUCG-CUCCU- -5'
24747 5' -56.2 NC_005264.1 + 38376 0.68 0.801904
Target:  5'- cCUCCU-CCGGCgAGA-GCGGCGAc-- -3'
miRNA:   3'- -GAGGAuGGCCGaUCUaCGUCGCUccu -5'
24747 5' -56.2 NC_005264.1 + 157403 0.68 0.801904
Target:  5'- cCUCCU-CCGGCgAGA-GCGGCGAc-- -3'
miRNA:   3'- -GAGGAuGGCCGaUCUaCGUCGCUccu -5'
24747 5' -56.2 NC_005264.1 + 160920 0.69 0.73619
Target:  5'- aCUCUUGCCGGaggaugGGAUcccgcagucGCGGCGGGGu -3'
miRNA:   3'- -GAGGAUGGCCga----UCUA---------CGUCGCUCCu -5'
24747 5' -56.2 NC_005264.1 + 41894 0.7 0.726367
Target:  5'- aCUCUUGCCGGaggaugGGAUccgcagucGCGGCGGGGu -3'
miRNA:   3'- -GAGGAUGGCCga----UCUA--------CGUCGCUCCu -5'
24747 5' -56.2 NC_005264.1 + 155260 0.7 0.716462
Target:  5'- uCUCCgcagCGGCgcgGGGUagGCGGCGGGGAc -3'
miRNA:   3'- -GAGGaug-GCCGa--UCUA--CGUCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 90562 0.71 0.635389
Target:  5'- uCUCCUcguuGCCGGCcAGuacgccucUGCAGCGcAGGAu -3'
miRNA:   3'- -GAGGA----UGGCCGaUCu-------ACGUCGC-UCCU- -5'
24747 5' -56.2 NC_005264.1 + 132890 0.71 0.635389
Target:  5'- aUCCUaggaucgguugACCGGCUAGgcGCAGCGGc-- -3'
miRNA:   3'- gAGGA-----------UGGCCGAUCuaCGUCGCUccu -5'
24747 5' -56.2 NC_005264.1 + 3363 0.75 0.421371
Target:  5'- gCUCCgcuCCGuCUGGggGCGGCGAGGGc -3'
miRNA:   3'- -GAGGau-GGCcGAUCuaCGUCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 122390 0.75 0.421371
Target:  5'- gCUCCgcuCCGuCUGGggGCGGCGAGGGc -3'
miRNA:   3'- -GAGGau-GGCcGAUCuaCGUCGCUCCU- -5'
24747 5' -56.2 NC_005264.1 + 30563 0.76 0.370602
Target:  5'- aCUUCUACCGGCgGGGUcGCAGgaGAGGAc -3'
miRNA:   3'- -GAGGAUGGCCGaUCUA-CGUCg-CUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.