miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24749 3' -55.4 NC_005264.1 + 155298 0.66 0.935163
Target:  5'- gGUAGGccguccucgugcGUAGGCGAGGAgagggcggACgucGUCGCUa -3'
miRNA:   3'- aCGUCC------------UAUCCGCUCCU--------UGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 36271 0.66 0.935163
Target:  5'- gGUAGGccguccucgugcGUAGGCGAGGAgagggcggACgucGUCGCUa -3'
miRNA:   3'- aCGUCC------------UAUCCGCUCCU--------UGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 136339 0.66 0.93316
Target:  5'- cGCGGGGagagauauuauacGGGCGcuGGGcGCUGCCGgCg -3'
miRNA:   3'- aCGUCCUa------------UCCGC--UCCuUGACGGUgG- -5'
24749 3' -55.4 NC_005264.1 + 28424 0.66 0.930083
Target:  5'- cGCGGGGUAGGacCGAacGGcAGCUGCguuagguaACCg -3'
miRNA:   3'- aCGUCCUAUCC--GCU--CC-UUGACGg-------UGG- -5'
24749 3' -55.4 NC_005264.1 + 45771 0.66 0.930083
Target:  5'- aGaCAGcGAUGGGCGccGGAGCgGCUAUUg -3'
miRNA:   3'- aC-GUC-CUAUCCGCu-CCUUGaCGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 120165 0.66 0.924762
Target:  5'- ---cGGAcGGGCGcacGGGACgauccgGCCGCCa -3'
miRNA:   3'- acguCCUaUCCGCu--CCUUGa-----CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 135449 0.66 0.924762
Target:  5'- cGCcuaagAGGGUagAGGCGAGGAucaucaauacguGCUccauuaGCCAUCa -3'
miRNA:   3'- aCG-----UCCUA--UCCGCUCCU------------UGA------CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 134457 0.66 0.924762
Target:  5'- -cCAGGAUcGGCauGGGGGACaauucUGCCGCa -3'
miRNA:   3'- acGUCCUAuCCG--CUCCUUG-----ACGGUGg -5'
24749 3' -55.4 NC_005264.1 + 28042 0.66 0.924762
Target:  5'- --aAGGAUugGGGCGAGGAuucgcgaugugcGCcaUGCgACCg -3'
miRNA:   3'- acgUCCUA--UCCGCUCCU------------UG--ACGgUGG- -5'
24749 3' -55.4 NC_005264.1 + 1138 0.66 0.924762
Target:  5'- ---cGGAcGGGCGcacGGGACgauccgGCCGCCa -3'
miRNA:   3'- acguCCUaUCCGCu--CCUUGa-----CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 148978 0.66 0.924762
Target:  5'- aGCAGGucGUGGGUGAuGggUUGuCCAUUg -3'
miRNA:   3'- aCGUCC--UAUCCGCUcCuuGAC-GGUGG- -5'
24749 3' -55.4 NC_005264.1 + 151380 0.66 0.921453
Target:  5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3'
miRNA:   3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5'
24749 3' -55.4 NC_005264.1 + 32353 0.66 0.921453
Target:  5'- cGgGGGGUGcuucggggcuguucuGGCGAGGAuGCcgGCgGCCg -3'
miRNA:   3'- aCgUCCUAU---------------CCGCUCCU-UGa-CGgUGG- -5'
24749 3' -55.4 NC_005264.1 + 84179 0.66 0.919199
Target:  5'- cGCcGGcacauaGUGGGaCGAGGcACaggGCCGCCg -3'
miRNA:   3'- aCGuCC------UAUCC-GCUCCuUGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 109829 0.66 0.919199
Target:  5'- gUGCAGGuugcggAGGCaGAGGAuuUUGcCCGCg -3'
miRNA:   3'- -ACGUCCua----UCCG-CUCCUu-GAC-GGUGg -5'
24749 3' -55.4 NC_005264.1 + 3684 0.66 0.917483
Target:  5'- gUGCGGGGccuGGCGcGGAAagggcgcacaguacUUGCCGCg -3'
miRNA:   3'- -ACGUCCUau-CCGCuCCUU--------------GACGGUGg -5'
24749 3' -55.4 NC_005264.1 + 6401 0.66 0.913396
Target:  5'- aGUGGGAUaucgAGGCGAuc-ACcGCCGCCa -3'
miRNA:   3'- aCGUCCUA----UCCGCUccuUGaCGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 96276 0.66 0.913396
Target:  5'- aGCAGGu--GGCGGcGGAGCUuGUggaaauCGCCg -3'
miRNA:   3'- aCGUCCuauCCGCU-CCUUGA-CG------GUGG- -5'
24749 3' -55.4 NC_005264.1 + 41851 0.66 0.907353
Target:  5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3'
miRNA:   3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5'
24749 3' -55.4 NC_005264.1 + 160877 0.66 0.907353
Target:  5'- gUGCauauGGGAgcucgGGGgGGGGGGCaacgGCCGCg -3'
miRNA:   3'- -ACG----UCCUa----UCCgCUCCUUGa---CGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.