miRNA display CGI


Results 61 - 80 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24749 3' -55.4 NC_005264.1 + 13331 0.69 0.808718
Target:  5'- aGCAGGAggagaggGGcGCGAGGAugaACgucgggGCCgaGCCg -3'
miRNA:   3'- aCGUCCUa------UC-CGCUCCU---UGa-----CGG--UGG- -5'
24749 3' -55.4 NC_005264.1 + 132358 0.69 0.808718
Target:  5'- aGCAGGAggagaggGGcGCGAGGAugaACgucgggGCCgaGCCg -3'
miRNA:   3'- aCGUCCUa------UC-CGCUCCU---UGa-----CGG--UGG- -5'
24749 3' -55.4 NC_005264.1 + 135946 0.69 0.799793
Target:  5'- gGCGGccggGGGCGAGcGAauuacucgcACUGCCGCUc -3'
miRNA:   3'- aCGUCcua-UCCGCUC-CU---------UGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 129504 0.69 0.798892
Target:  5'- cGCAGGGUuuggcggcgccggAGGCGAcGGAaccACUGCgGgCg -3'
miRNA:   3'- aCGUCCUA-------------UCCGCU-CCU---UGACGgUgG- -5'
24749 3' -55.4 NC_005264.1 + 84903 0.7 0.762651
Target:  5'- cGCAGGAcgggaGGGCG-GGAAgaGCCAg- -3'
miRNA:   3'- aCGUCCUa----UCCGCuCCUUgaCGGUgg -5'
24749 3' -55.4 NC_005264.1 + 127031 0.7 0.75305
Target:  5'- uUGCGGGGccGGCaGAGGcgcccgccacGACggcGCCACCg -3'
miRNA:   3'- -ACGUCCUauCCG-CUCC----------UUGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 8004 0.7 0.75305
Target:  5'- uUGCGGGGccGGCaGAGGcgcccgccacGACggcGCCACCg -3'
miRNA:   3'- -ACGUCCUauCCG-CUCC----------UUGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 28874 0.7 0.743342
Target:  5'- cGCGGGcUAGGUuucauGAACUGCUGCCa -3'
miRNA:   3'- aCGUCCuAUCCGcuc--CUUGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 3718 0.7 0.742365
Target:  5'- cGUGGGAUGcGGacgaggaagacgaCGAGGAGCggggccucuUGCCGCCg -3'
miRNA:   3'- aCGUCCUAU-CC-------------GCUCCUUG---------ACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 105868 0.7 0.733535
Target:  5'- cGCGGGcgA--CGAGGGACUcgucGCCGCCa -3'
miRNA:   3'- aCGUCCuaUccGCUCCUUGA----CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 13901 0.7 0.733535
Target:  5'- cUGCAGGcgacgGGGCGcgaacguccAGGAggcaaaGCUGCCGCa -3'
miRNA:   3'- -ACGUCCua---UCCGC---------UCCU------UGACGGUGg -5'
24749 3' -55.4 NC_005264.1 + 156141 0.7 0.730575
Target:  5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3'
miRNA:   3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5'
24749 3' -55.4 NC_005264.1 + 37114 0.7 0.730575
Target:  5'- gGCAGGAcgaGGGCGAGGcGgccgucucggccucGCUGCUggcGCCa -3'
miRNA:   3'- aCGUCCUa--UCCGCUCC-U--------------UGACGG---UGG- -5'
24749 3' -55.4 NC_005264.1 + 54266 0.7 0.723639
Target:  5'- aGUGGGAgcgGGGCGAGGAcCaugGCCAa- -3'
miRNA:   3'- aCGUCCUa--UCCGCUCCUuGa--CGGUgg -5'
24749 3' -55.4 NC_005264.1 + 25166 0.7 0.720655
Target:  5'- gGCAGGGgguGGCGGGGcaagaaagaaaucuGAggGCCGCCc -3'
miRNA:   3'- aCGUCCUau-CCGCUCC--------------UUgaCGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 120497 0.71 0.713664
Target:  5'- aGUAGGuggcggGGGCGAGGcccucauagacaAACUGCUugCc -3'
miRNA:   3'- aCGUCCua----UCCGCUCC------------UUGACGGugG- -5'
24749 3' -55.4 NC_005264.1 + 3458 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 122485 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 45036 0.71 0.703619
Target:  5'- gGCAGGAUGgacGGCGAcgaGGA--UGCCGCg -3'
miRNA:   3'- aCGUCCUAU---CCGCU---CCUugACGGUGg -5'
24749 3' -55.4 NC_005264.1 + 150705 0.71 0.703619
Target:  5'- gGCAGGGcucucGGCGGGG--CUGcCCGCCa -3'
miRNA:   3'- aCGUCCUau---CCGCUCCuuGAC-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.