miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24749 3' -55.4 NC_005264.1 + 146595 0.68 0.858591
Target:  5'- uUGCGGGGUGGGCGuacacaGAACUGaUgGCa -3'
miRNA:   3'- -ACGUCCUAUCCGCuc----CUUGAC-GgUGg -5'
24749 3' -55.4 NC_005264.1 + 136339 0.66 0.93316
Target:  5'- cGCGGGGagagauauuauacGGGCGcuGGGcGCUGCCGgCg -3'
miRNA:   3'- aCGUCCUa------------UCCGC--UCCuUGACGGUgG- -5'
24749 3' -55.4 NC_005264.1 + 135946 0.69 0.799793
Target:  5'- gGCGGccggGGGCGAGcGAauuacucgcACUGCCGCUc -3'
miRNA:   3'- aCGUCcua-UCCGCUC-CU---------UGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 135449 0.66 0.924762
Target:  5'- cGCcuaagAGGGUagAGGCGAGGAucaucaauacguGCUccauuaGCCAUCa -3'
miRNA:   3'- aCG-----UCCUA--UCCGCUCCU------------UGA------CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 134457 0.66 0.924762
Target:  5'- -cCAGGAUcGGCauGGGGGACaauucUGCCGCa -3'
miRNA:   3'- acGUCCUAuCCG--CUCCUUG-----ACGGUGg -5'
24749 3' -55.4 NC_005264.1 + 132358 0.69 0.808718
Target:  5'- aGCAGGAggagaggGGcGCGAGGAugaACgucgggGCCgaGCCg -3'
miRNA:   3'- aCGUCCUa------UC-CGCUCCU---UGa-----CGG--UGG- -5'
24749 3' -55.4 NC_005264.1 + 131568 0.68 0.86622
Target:  5'- gGUAGGA---GCGGGGGGCguucGCCGCg -3'
miRNA:   3'- aCGUCCUaucCGCUCCUUGa---CGGUGg -5'
24749 3' -55.4 NC_005264.1 + 130366 0.77 0.383299
Target:  5'- ---cGGAccguucuGGCGAGGAACUGCCAUCu -3'
miRNA:   3'- acguCCUau-----CCGCUCCUUGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 129504 0.69 0.798892
Target:  5'- cGCAGGGUuuggcggcgccggAGGCGAcGGAaccACUGCgGgCg -3'
miRNA:   3'- aCGUCCUA-------------UCCGCU-CCU---UGACGgUgG- -5'
24749 3' -55.4 NC_005264.1 + 128972 0.8 0.265844
Target:  5'- aGCAGaGAcgccGGCGAGGGACUGCCggACCc -3'
miRNA:   3'- aCGUC-CUau--CCGCUCCUUGACGG--UGG- -5'
24749 3' -55.4 NC_005264.1 + 127031 0.7 0.75305
Target:  5'- uUGCGGGGccGGCaGAGGcgcccgccacGACggcGCCACCg -3'
miRNA:   3'- -ACGUCCUauCCG-CUCC----------UUGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 126324 0.69 0.817482
Target:  5'- cGaCGGGAaAGGCGAacucugGGAACgaGCCGCg -3'
miRNA:   3'- aC-GUCCUaUCCGCU------CCUUGa-CGGUGg -5'
24749 3' -55.4 NC_005264.1 + 125739 0.75 0.481815
Target:  5'- aGUAGu-UGGGCGccguccccGGAACUGCCGCCg -3'
miRNA:   3'- aCGUCcuAUCCGCu-------CCUUGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 125158 0.74 0.501041
Target:  5'- gUGCGGGA-GGGCGAGG-GCcGCgCGCCc -3'
miRNA:   3'- -ACGUCCUaUCCGCUCCuUGaCG-GUGG- -5'
24749 3' -55.4 NC_005264.1 + 122745 0.68 0.833657
Target:  5'- cGUGGGAUgcgacgAGGaagacgaCGAGGAGCggggccucuUGCCGCCg -3'
miRNA:   3'- aCGUCCUA------UCC-------GCUCCUUG---------ACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 122485 0.71 0.713664
Target:  5'- cGCcacgAGGGUcucggGGGCGAuGGGcUUGCCGCCg -3'
miRNA:   3'- aCG----UCCUA-----UCCGCU-CCUuGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 122429 0.75 0.453669
Target:  5'- cGCGGGGUcggugcgcGGGgGAGGGACguaggGCCGCg -3'
miRNA:   3'- aCGUCCUA--------UCCgCUCCUUGa----CGGUGg -5'
24749 3' -55.4 NC_005264.1 + 121925 0.67 0.880125
Target:  5'- gGCGGGGaGGGCGAcGGcgagagcGACggaGUCGCCg -3'
miRNA:   3'- aCGUCCUaUCCGCU-CC-------UUGa--CGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 120800 0.68 0.826075
Target:  5'- cGCGauuGGAUAGGCcgcgugcgcGucGAcACUGCCGCCg -3'
miRNA:   3'- aCGU---CCUAUCCG---------CucCU-UGACGGUGG- -5'
24749 3' -55.4 NC_005264.1 + 120497 0.71 0.713664
Target:  5'- aGUAGGuggcggGGGCGAGGcccucauagacaAACUGCUugCc -3'
miRNA:   3'- aCGUCCua----UCCGCUCC------------UUGACGGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.