miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24749 5' -53.7 NC_005264.1 + 151495 1.1 0.004485
Target:  5'- cCAGAUGGCAGUUCCUCGCCAGAACGGu -3'
miRNA:   3'- -GUCUACCGUCAAGGAGCGGUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 32468 1.1 0.004485
Target:  5'- cCAGAUGGCAGUUCCUCGCCAGAACGGu -3'
miRNA:   3'- -GUCUACCGUCAAGGAGCGGUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 11376 0.81 0.314336
Target:  5'- -cGGUGGCAGUUCCUCGCCuauccugcagagGGAGUGGc -3'
miRNA:   3'- guCUACCGUCAAGGAGCGG------------UCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 130403 0.81 0.314336
Target:  5'- -cGGUGGCAGUUCCUCGCCuauccugcagagGGAGUGGc -3'
miRNA:   3'- guCUACCGUCAAGGAGCGG------------UCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 11448 0.72 0.746044
Target:  5'- ----cGGCA--UCCUCGCCAGAACa- -3'
miRNA:   3'- gucuaCCGUcaAGGAGCGGUCUUGcc -5'
24749 5' -53.7 NC_005264.1 + 130475 0.72 0.746044
Target:  5'- ----cGGCA--UCCUCGCCAGAACa- -3'
miRNA:   3'- gucuaCCGUcaAGGAGCGGUCUUGcc -5'
24749 5' -53.7 NC_005264.1 + 45576 0.72 0.769153
Target:  5'- aUAGGUGGCAcgagaccgcggucucGUUCUccgcaUCGCCGGGGCGa -3'
miRNA:   3'- -GUCUACCGU---------------CAAGG-----AGCGGUCUUGCc -5'
24749 5' -53.7 NC_005264.1 + 131995 0.71 0.811342
Target:  5'- -cGGUGGCGGUgggCCgaccggCGCCAGAuuACGu -3'
miRNA:   3'- guCUACCGUCAa--GGa-----GCGGUCU--UGCc -5'
24749 5' -53.7 NC_005264.1 + 162543 0.7 0.828645
Target:  5'- gGGAUGGUAuacccagcGcUCUUCGCCAGAAUGa -3'
miRNA:   3'- gUCUACCGU--------CaAGGAGCGGUCUUGCc -5'
24749 5' -53.7 NC_005264.1 + 126278 0.7 0.868598
Target:  5'- aGGAcuUGGCGGaggUCggCGCCAGGACGa -3'
miRNA:   3'- gUCU--ACCGUCa--AGgaGCGGUCUUGCc -5'
24749 5' -53.7 NC_005264.1 + 7251 0.7 0.868598
Target:  5'- aGGAcuUGGCGGaggUCggCGCCAGGACGa -3'
miRNA:   3'- gUCU--ACCGUCa--AGgaGCGGUCUUGCc -5'
24749 5' -53.7 NC_005264.1 + 7886 0.69 0.875967
Target:  5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3'
miRNA:   3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5'
24749 5' -53.7 NC_005264.1 + 31772 0.69 0.875967
Target:  5'- gGGAUGGUucgcgGGcgCUUCGCCuaAGGGCGGc -3'
miRNA:   3'- gUCUACCG-----UCaaGGAGCGG--UCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 150798 0.69 0.875967
Target:  5'- gGGAUGGUucgcgGGcgCUUCGCCuaAGGGCGGc -3'
miRNA:   3'- gUCUACCG-----UCaaGGAGCGG--UCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 126912 0.69 0.875967
Target:  5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3'
miRNA:   3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5'
24749 5' -53.7 NC_005264.1 + 33859 0.69 0.883114
Target:  5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3'
miRNA:   3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5'
24749 5' -53.7 NC_005264.1 + 152885 0.69 0.883114
Target:  5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3'
miRNA:   3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5'
24749 5' -53.7 NC_005264.1 + 92495 0.69 0.883114
Target:  5'- -cGGUGGCGGUgcgCCUgGCCaucuguGGAuccGCGGa -3'
miRNA:   3'- guCUACCGUCAa--GGAgCGG------UCU---UGCC- -5'
24749 5' -53.7 NC_005264.1 + 76885 0.69 0.902547
Target:  5'- gAGAUGGaCAaUUCUccguacaUUGCCGGGACGGu -3'
miRNA:   3'- gUCUACC-GUcAAGG-------AGCGGUCUUGCC- -5'
24749 5' -53.7 NC_005264.1 + 13502 0.68 0.926616
Target:  5'- gGGAUGGCGGUaaaUCGuCCAacucGAACGGc -3'
miRNA:   3'- gUCUACCGUCAaggAGC-GGU----CUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.