Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24749 | 5' | -53.7 | NC_005264.1 | + | 11448 | 0.72 | 0.746044 |
Target: 5'- ----cGGCA--UCCUCGCCAGAACa- -3' miRNA: 3'- gucuaCCGUcaAGGAGCGGUCUUGcc -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 11376 | 0.81 | 0.314336 |
Target: 5'- -cGGUGGCAGUUCCUCGCCuauccugcagagGGAGUGGc -3' miRNA: 3'- guCUACCGUCAAGGAGCGG------------UCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 7886 | 0.69 | 0.875967 |
Target: 5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3' miRNA: 3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 33859 | 0.69 | 0.883114 |
Target: 5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3' miRNA: 3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 76885 | 0.69 | 0.902547 |
Target: 5'- gAGAUGGaCAaUUCUccguacaUUGCCGGGACGGu -3' miRNA: 3'- gUCUACC-GUcAAGG-------AGCGGUCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 3501 | 0.67 | 0.93688 |
Target: 5'- gCGGggGGCAGgggaUCCUCGCCGuccgccucgucGAACc- -3' miRNA: 3'- -GUCuaCCGUCa---AGGAGCGGU-----------CUUGcc -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 43950 | 0.67 | 0.93688 |
Target: 5'- -cGGUGGuCAGgcCCUacCGCCcGAACGGu -3' miRNA: 3'- guCUACC-GUCaaGGA--GCGGuCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 96400 | 0.67 | 0.93688 |
Target: 5'- ---uUGGCGacuGUUCCUCaaGgCAGAACGGa -3' miRNA: 3'- gucuACCGU---CAAGGAG--CgGUCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 66464 | 0.67 | 0.954526 |
Target: 5'- gAGAUGGCAccgCCgcgGCCAGAcucaaugcuugGCGGg -3' miRNA: 3'- gUCUACCGUcaaGGag-CGGUCU-----------UGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 38358 | 0.67 | 0.957979 |
Target: 5'- gCGGcggGGCGGUuaggaccUCCUCcgGCgAGAGCGGc -3' miRNA: 3'- -GUCua-CCGUCA-------AGGAG--CGgUCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 44885 | 0.66 | 0.965328 |
Target: 5'- gGGA-GGCGGgcccgUCgUCGUCuGGGGCGGg -3' miRNA: 3'- gUCUaCCGUCa----AGgAGCGG-UCUUGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 138170 | 0.66 | 0.970866 |
Target: 5'- gAGGUGGCGGcuuccggccugCCUCGCUgcagAGAcaagGCGGc -3' miRNA: 3'- gUCUACCGUCaa---------GGAGCGG----UCU----UGCC- -5' |
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24749 | 5' | -53.7 | NC_005264.1 | + | 32468 | 1.1 | 0.004485 |
Target: 5'- cCAGAUGGCAGUUCCUCGCCAGAACGGu -3' miRNA: 3'- -GUCUACCGUCAAGGAGCGGUCUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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