miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24750 5' -54.2 NC_005264.1 + 128964 0.66 0.96699
Target:  5'- aGGUUCGaAGCAGaGacgCCGGCgaGGGAc -3'
miRNA:   3'- gCUAAGCaUCGUC-Caa-GGCUGg-CCCU- -5'
24750 5' -54.2 NC_005264.1 + 9938 0.66 0.96699
Target:  5'- aGGUUCGaAGCAGaGacgCCGGCgaGGGAc -3'
miRNA:   3'- gCUAAGCaUCGUC-Caa-GGCUGg-CCCU- -5'
24750 5' -54.2 NC_005264.1 + 66441 0.67 0.952781
Target:  5'- aCGAUUCG-GGC-GcUUCCGAUgGGGAg -3'
miRNA:   3'- -GCUAAGCaUCGuCcAAGGCUGgCCCU- -5'
24750 5' -54.2 NC_005264.1 + 14048 0.67 0.944329
Target:  5'- ----aCGUGGCGGGg-CCGGgUGGGAa -3'
miRNA:   3'- gcuaaGCAUCGUCCaaGGCUgGCCCU- -5'
24750 5' -54.2 NC_005264.1 + 52686 0.67 0.934945
Target:  5'- aGAUUCGUGGCcgauaCCGAgUGGGAu -3'
miRNA:   3'- gCUAAGCAUCGuccaaGGCUgGCCCU- -5'
24750 5' -54.2 NC_005264.1 + 103833 0.72 0.74499
Target:  5'- uCGAUUCGcugAGCGccaagcuucuGGgcCCGGCCGGGGg -3'
miRNA:   3'- -GCUAAGCa--UCGU----------CCaaGGCUGGCCCU- -5'
24750 5' -54.2 NC_005264.1 + 152356 1.09 0.005329
Target:  5'- uCGAUUCGUAGCAGGUUCCGACCGGGAu -3'
miRNA:   3'- -GCUAAGCAUCGUCCAAGGCUGGCCCU- -5'
24750 5' -54.2 NC_005264.1 + 33329 1.09 0.005329
Target:  5'- uCGAUUCGUAGCAGGUUCCGACCGGGAu -3'
miRNA:   3'- -GCUAAGCAUCGUCCAAGGCUGGCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.