Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24750 | 5' | -54.2 | NC_005264.1 | + | 128964 | 0.66 | 0.96699 |
Target: 5'- aGGUUCGaAGCAGaGacgCCGGCgaGGGAc -3' miRNA: 3'- gCUAAGCaUCGUC-Caa-GGCUGg-CCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 9938 | 0.66 | 0.96699 |
Target: 5'- aGGUUCGaAGCAGaGacgCCGGCgaGGGAc -3' miRNA: 3'- gCUAAGCaUCGUC-Caa-GGCUGg-CCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 66441 | 0.67 | 0.952781 |
Target: 5'- aCGAUUCG-GGC-GcUUCCGAUgGGGAg -3' miRNA: 3'- -GCUAAGCaUCGuCcAAGGCUGgCCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 14048 | 0.67 | 0.944329 |
Target: 5'- ----aCGUGGCGGGg-CCGGgUGGGAa -3' miRNA: 3'- gcuaaGCAUCGUCCaaGGCUgGCCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 52686 | 0.67 | 0.934945 |
Target: 5'- aGAUUCGUGGCcgauaCCGAgUGGGAu -3' miRNA: 3'- gCUAAGCAUCGuccaaGGCUgGCCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 103833 | 0.72 | 0.74499 |
Target: 5'- uCGAUUCGcugAGCGccaagcuucuGGgcCCGGCCGGGGg -3' miRNA: 3'- -GCUAAGCa--UCGU----------CCaaGGCUGGCCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 152356 | 1.09 | 0.005329 |
Target: 5'- uCGAUUCGUAGCAGGUUCCGACCGGGAu -3' miRNA: 3'- -GCUAAGCAUCGUCCAAGGCUGGCCCU- -5' |
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24750 | 5' | -54.2 | NC_005264.1 | + | 33329 | 1.09 | 0.005329 |
Target: 5'- uCGAUUCGUAGCAGGUUCCGACCGGGAu -3' miRNA: 3'- -GCUAAGCAUCGUCCAAGGCUGGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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