miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24751 5' -60.2 NC_005264.1 + 116444 0.67 0.693889
Target:  5'- -gGCCGCGGG-GGCGacgaUCGggGcGGu -3'
miRNA:   3'- caCGGCGCUCgCCGCg---AGCuuCuCCu -5'
24751 5' -60.2 NC_005264.1 + 37394 0.67 0.693889
Target:  5'- -cGCCGCGAGa-GUGUaCGuGGAGGAg -3'
miRNA:   3'- caCGGCGCUCgcCGCGaGCuUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 20456 0.67 0.693889
Target:  5'- -aGCCgGCGgacAGCGGCGCgcauGGGAGGGc -3'
miRNA:   3'- caCGG-CGC---UCGCCGCGagc-UUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 156421 0.67 0.693889
Target:  5'- -cGCCGCGAGa-GUGUaCGuGGAGGAg -3'
miRNA:   3'- caCGGCGCUCgcCGCGaGCuUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 118077 0.67 0.69291
Target:  5'- -cGCCGCGGGCaccuuugGGCGCaCGAAGuagcccaugguGGAu -3'
miRNA:   3'- caCGGCGCUCG-------CCGCGaGCUUCu----------CCU- -5'
24751 5' -60.2 NC_005264.1 + 153295 0.67 0.684078
Target:  5'- -aGgCGCGGGCGaCGCgUCGAAGAGu- -3'
miRNA:   3'- caCgGCGCUCGCcGCG-AGCUUCUCcu -5'
24751 5' -60.2 NC_005264.1 + 34268 0.67 0.684078
Target:  5'- -aGgCGCGGGCGaCGCgUCGAAGAGu- -3'
miRNA:   3'- caCgGCGCUCGCcGCG-AGCUUCUCcu -5'
24751 5' -60.2 NC_005264.1 + 70152 0.67 0.683095
Target:  5'- cUGCCGCG-GCGGCGCcucacUaccgcaauaccugCGAGGuGGAc -3'
miRNA:   3'- cACGGCGCuCGCCGCG-----A-------------GCUUCuCCU- -5'
24751 5' -60.2 NC_005264.1 + 27642 0.67 0.681127
Target:  5'- -cG-CGCGAacucguuuggccacGCGGCGCUCGGAccGAGGu -3'
miRNA:   3'- caCgGCGCU--------------CGCCGCGAGCUU--CUCCu -5'
24751 5' -60.2 NC_005264.1 + 36502 0.67 0.674227
Target:  5'- cGUGCgaaGCGcGCGGC-CUCGAcGAGGc -3'
miRNA:   3'- -CACGg--CGCuCGCCGcGAGCUuCUCCu -5'
24751 5' -60.2 NC_005264.1 + 3075 0.67 0.67324
Target:  5'- -cGCCGCGAcugGCGGCGgC-CGAGGAcccguucGGGc -3'
miRNA:   3'- caCGGCGCU---CGCCGC-GaGCUUCU-------CCU- -5'
24751 5' -60.2 NC_005264.1 + 122102 0.67 0.67324
Target:  5'- -cGCCGCGAcugGCGGCGgC-CGAGGAcccguucGGGc -3'
miRNA:   3'- caCGGCGCU---CGCCGC-GaGCUUCU-------CCU- -5'
24751 5' -60.2 NC_005264.1 + 77800 0.67 0.654435
Target:  5'- -cGCgGCGcAGacggcauugaCGGCGCggaCGAAGAGGAc -3'
miRNA:   3'- caCGgCGC-UC----------GCCGCGa--GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 30551 0.67 0.654435
Target:  5'- gGUGUCGCGAucacuucuaccgGCGGgGUcgcaGGAGAGGAc -3'
miRNA:   3'- -CACGGCGCU------------CGCCgCGag--CUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 43236 0.67 0.651458
Target:  5'- -gGCUgGCGGGCGgacuaaguaaggauGCGCUCGGgcauAGGGGAg -3'
miRNA:   3'- caCGG-CGCUCGC--------------CGCGAGCU----UCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 162263 0.67 0.651458
Target:  5'- -gGCUgGCGGGCGgacuaaguaaggauGCGCUCGGgcauAGGGGAg -3'
miRNA:   3'- caCGG-CGCUCGC--------------CGCGAGCU----UCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 152980 0.68 0.644509
Target:  5'- uUGCgGUcucCGGCGCgggCGAGGAGGAg -3'
miRNA:   3'- cACGgCGcucGCCGCGa--GCUUCUCCU- -5'
24751 5' -60.2 NC_005264.1 + 122638 0.68 0.644509
Target:  5'- -cGCCGCGGGgGGC-CgCGAGGGcGGGc -3'
miRNA:   3'- caCGGCGCUCgCCGcGaGCUUCU-CCU- -5'
24751 5' -60.2 NC_005264.1 + 3611 0.68 0.644509
Target:  5'- -cGCCGCGGGgGGC-CgCGAGGGcGGGc -3'
miRNA:   3'- caCGGCGCUCgCCGcGaGCUUCU-CCU- -5'
24751 5' -60.2 NC_005264.1 + 151064 0.68 0.643516
Target:  5'- cUGCCccggaguGCGAGCcaGGCGCcCGGAGAGa- -3'
miRNA:   3'- cACGG-------CGCUCG--CCGCGaGCUUCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.