miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24752 5' -51.2 NC_005264.1 + 22855 0.66 0.991589
Target:  5'- cGUCGuCCUCccuGACAcgucgaggguucGCAGCAuCUCCGGg -3'
miRNA:   3'- -UAGUuGGAG---CUGU------------UGUUGUcGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 57698 0.66 0.991589
Target:  5'- cUCGACCgCGGCAuACAGC-GCUUCGu -3'
miRNA:   3'- uAGUUGGaGCUGU-UGUUGuCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 19174 0.66 0.991589
Target:  5'- -aCAACCagGAU---GAUGGCUCCGGg -3'
miRNA:   3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 127815 0.66 0.990373
Target:  5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3'
miRNA:   3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 158114 0.66 0.990373
Target:  5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3'
miRNA:   3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 115526 0.66 0.990373
Target:  5'- ---cGCCUCGACGcgGGCAGUUCCc- -3'
miRNA:   3'- uaguUGGAGCUGUugUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 8789 0.66 0.990373
Target:  5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3'
miRNA:   3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 39087 0.66 0.990373
Target:  5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3'
miRNA:   3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 96699 0.66 0.989024
Target:  5'- uGUCcGCCUCu-UAACAGCGG-UCCGGu -3'
miRNA:   3'- -UAGuUGGAGcuGUUGUUGUCgAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 137538 0.66 0.989024
Target:  5'- gGUCGGCCUCGGCGACGuggUAGgUCa-- -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUu--GUCgAGgcc -5'
24752 5' -51.2 NC_005264.1 + 151892 0.67 0.987532
Target:  5'- cAUCAGCUguaugUGGCGgaggggACGGCGGCUCCa- -3'
miRNA:   3'- -UAGUUGGa----GCUGU------UGUUGUCGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 98034 0.67 0.987532
Target:  5'- uUCAGCCUCGcggcaauuaACGGCAACucGUUCCu- -3'
miRNA:   3'- uAGUUGGAGC---------UGUUGUUGu-CGAGGcc -5'
24752 5' -51.2 NC_005264.1 + 112969 0.67 0.987532
Target:  5'- uUUAGCCaaUCGGu--CAGCAGCUCCGc -3'
miRNA:   3'- uAGUUGG--AGCUguuGUUGUCGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 118925 0.67 0.987374
Target:  5'- cUCGACgUCGA-GGCGACGGCcgcgcucaucgucUCCGGc -3'
miRNA:   3'- uAGUUGgAGCUgUUGUUGUCG-------------AGGCC- -5'
24752 5' -51.2 NC_005264.1 + 35687 0.67 0.985888
Target:  5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3'
miRNA:   3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 154713 0.67 0.985888
Target:  5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3'
miRNA:   3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5'
24752 5' -51.2 NC_005264.1 + 95352 0.67 0.984083
Target:  5'- -aCGGaCUCGGCGggGCGGCGGC-CCGGc -3'
miRNA:   3'- uaGUUgGAGCUGU--UGUUGUCGaGGCC- -5'
24752 5' -51.2 NC_005264.1 + 83844 0.67 0.984083
Target:  5'- -gCAACCUCGGCAgguaACuccuUAGUUUCGGc -3'
miRNA:   3'- uaGUUGGAGCUGU----UGuu--GUCGAGGCC- -5'
24752 5' -51.2 NC_005264.1 + 55825 0.67 0.982108
Target:  5'- uUCAGCCggUGGCGGCG-CGGCUgaCUGGg -3'
miRNA:   3'- uAGUUGGa-GCUGUUGUuGUCGA--GGCC- -5'
24752 5' -51.2 NC_005264.1 + 21202 0.67 0.982108
Target:  5'- cGUCGGCCgcagugguacuuUCGGCcGCGACGGCuuUCCGc -3'
miRNA:   3'- -UAGUUGG------------AGCUGuUGUUGUCG--AGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.