miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24753 3' -59.4 NC_005264.1 + 31466 0.66 0.837126
Target:  5'- -gCGUCGCCgAUGGGCGUg--GaUGGu -3'
miRNA:   3'- ggGCAGCGGgUGCCCGCGgaaCaACC- -5'
24753 3' -59.4 NC_005264.1 + 87122 0.66 0.837126
Target:  5'- cUCCGgCGCCCGCgGGGCGCa------- -3'
miRNA:   3'- -GGGCaGCGGGUG-CCCGCGgaacaacc -5'
24753 3' -59.4 NC_005264.1 + 150493 0.66 0.837126
Target:  5'- -gCGUCGCCgAUGGGCGUg--GaUGGu -3'
miRNA:   3'- ggGCAGCGGgUGCCCGCGgaaCaACC- -5'
24753 3' -59.4 NC_005264.1 + 7410 0.66 0.829178
Target:  5'- gCCGUCGUCCAUuGGuucguGCGCCggg-UGGu -3'
miRNA:   3'- gGGCAGCGGGUG-CC-----CGCGGaacaACC- -5'
24753 3' -59.4 NC_005264.1 + 120096 0.66 0.827568
Target:  5'- gUCGU-GCCCAcCGGGUGCCgcgcagaagUGGg -3'
miRNA:   3'- gGGCAgCGGGU-GCCCGCGGaaca-----ACC- -5'
24753 3' -59.4 NC_005264.1 + 148949 0.66 0.821065
Target:  5'- cCCCGUCGCCUGCaGGCGacgaCgcGUagagcaggucgUGGg -3'
miRNA:   3'- -GGGCAGCGGGUGcCCGCg---GaaCA-----------ACC- -5'
24753 3' -59.4 NC_005264.1 + 159672 0.66 0.812796
Target:  5'- gCCGUCGCgCGCggaGGGuCGCCguuucgGUUGc -3'
miRNA:   3'- gGGCAGCGgGUG---CCC-GCGGaa----CAACc -5'
24753 3' -59.4 NC_005264.1 + 95460 0.67 0.799256
Target:  5'- aCCG-CGCCgGCGGGCGCagcgagcgcGGg -3'
miRNA:   3'- gGGCaGCGGgUGCCCGCGgaacaa---CC- -5'
24753 3' -59.4 NC_005264.1 + 80990 0.67 0.787117
Target:  5'- cCUCGaCGCCgACGuGGCcuccGCCUUGgUGGu -3'
miRNA:   3'- -GGGCaGCGGgUGC-CCG----CGGAACaACC- -5'
24753 3' -59.4 NC_005264.1 + 103616 0.67 0.778293
Target:  5'- uCCCGcgaauuugcUCGaggCCAUGuGG-GCCUUGUUGGg -3'
miRNA:   3'- -GGGC---------AGCg--GGUGC-CCgCGGAACAACC- -5'
24753 3' -59.4 NC_005264.1 + 141302 0.67 0.751132
Target:  5'- gCCGUCGCCCACGaaGCGUCa------ -3'
miRNA:   3'- gGGCAGCGGGUGCc-CGCGGaacaacc -5'
24753 3' -59.4 NC_005264.1 + 141508 0.68 0.723109
Target:  5'- cCCCGgCGCauCUACGGGCGCCa------ -3'
miRNA:   3'- -GGGCaGCG--GGUGCCCGCGGaacaacc -5'
24753 3' -59.4 NC_005264.1 + 97668 0.68 0.723109
Target:  5'- gCCG-CGgCCAUggccagagaGGGCGCCgccgcggUGUUGGu -3'
miRNA:   3'- gGGCaGCgGGUG---------CCCGCGGa------ACAACC- -5'
24753 3' -59.4 NC_005264.1 + 21351 0.68 0.713615
Target:  5'- gCCGuUCGUCC-CGGGCcGCCUcGgccggUGGa -3'
miRNA:   3'- gGGC-AGCGGGuGCCCG-CGGAaCa----ACC- -5'
24753 3' -59.4 NC_005264.1 + 52943 0.68 0.704057
Target:  5'- gCCG-CGCCCGCGGcgcauuGCGCCgcg--GGg -3'
miRNA:   3'- gGGCaGCGGGUGCC------CGCGGaacaaCC- -5'
24753 3' -59.4 NC_005264.1 + 160640 0.69 0.665348
Target:  5'- aCCCuuagCGCgCAUGGGCGCCggcaaUGgaGGg -3'
miRNA:   3'- -GGGca--GCGgGUGCCCGCGGa----ACaaCC- -5'
24753 3' -59.4 NC_005264.1 + 121411 0.69 0.65559
Target:  5'- gCCGUCGCCCGCaggagcccGGCGCCg------ -3'
miRNA:   3'- gGGCAGCGGGUGc-------CCGCGGaacaacc -5'
24753 3' -59.4 NC_005264.1 + 2384 0.69 0.65559
Target:  5'- gCCGUCGCCCGCaggagcccGGCGCCg------ -3'
miRNA:   3'- gGGCAGCGGGUGc-------CCGCGGaacaacc -5'
24753 3' -59.4 NC_005264.1 + 154826 0.69 0.645815
Target:  5'- gCCGUCG-UgGCGGGCGCCUcUGccGGc -3'
miRNA:   3'- gGGCAGCgGgUGCCCGCGGA-ACaaCC- -5'
24753 3' -59.4 NC_005264.1 + 24496 0.69 0.645815
Target:  5'- --aGUCGCgUuCGGGCGCCUUGUc-- -3'
miRNA:   3'- gggCAGCGgGuGCCCGCGGAACAacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.