Results 41 - 60 of 346 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24755 | 5' | -60.7 | NC_005264.1 | + | 103053 | 0.66 | 0.709963 |
Target: 5'- -uCCGCGGCGgacaCGgCCGUG-GACAGCc -3' miRNA: 3'- acGGCGCUGCg---GCgGGCACgUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 33852 | 0.66 | 0.737618 |
Target: 5'- cGCCGCGgcagagcugaagaACGuggagcguCCGCUCGagGCGGCGGUg -3' miRNA: 3'- aCGGCGC-------------UGC--------GGCGGGCa-CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 148571 | 0.66 | 0.73856 |
Target: 5'- gGcCCGCGACG-UGCCCGaggaacGCGcuACAGUa -3' miRNA: 3'- aC-GGCGCUGCgGCGGGCa-----CGU--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 95441 | 0.66 | 0.729103 |
Target: 5'- aGCCGuCGugGaauacgcuaCCGCgCCG-GCGggcGCAGCg -3' miRNA: 3'- aCGGC-GCugC---------GGCG-GGCaCGU---UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 74741 | 0.66 | 0.74793 |
Target: 5'- cGCCGgcCGACGCUguGCCCGacGCGcACuGCu -3' miRNA: 3'- aCGGC--GCUGCGG--CGGGCa-CGU-UGuCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 40547 | 0.66 | 0.729103 |
Target: 5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3' miRNA: 3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 92992 | 0.66 | 0.74793 |
Target: 5'- cGCCGCaGcACGCgGCC-GUaGCGGgGGCa -3' miRNA: 3'- aCGGCG-C-UGCGgCGGgCA-CGUUgUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 13391 | 0.66 | 0.719568 |
Target: 5'- cG-CGCGAcgaugaugacCGCCGucaaCCCGaGCAACAGCc -3' miRNA: 3'- aCgGCGCU----------GCGGC----GGGCaCGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 31168 | 0.66 | 0.729103 |
Target: 5'- aGCCGaCG-UGCCGCCaaCGgucugGCGGCGGg -3' miRNA: 3'- aCGGC-GCuGCGGCGG--GCa----CGUUGUCg -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 7401 | 0.66 | 0.729103 |
Target: 5'- gGCCcCGGCGCCGUCguccauugguuCGUGCGcCGGg -3' miRNA: 3'- aCGGcGCUGCGGCGG-----------GCACGUuGUCg -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 131922 | 0.66 | 0.719568 |
Target: 5'- gGaCCGuCGA-GCCGCCCG-GCcucGCAGUc -3' miRNA: 3'- aC-GGC-GCUgCGGCGGGCaCGu--UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 135572 | 0.66 | 0.719568 |
Target: 5'- aGCCGCG-CGUCGCUCGcGacuACGGg -3' miRNA: 3'- aCGGCGCuGCGGCGGGCaCgu-UGUCg -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 91521 | 0.66 | 0.700297 |
Target: 5'- aUGCCGCGcacuCGCCaaguucauGCUCGcGCAuaucgggcGCGGCg -3' miRNA: 3'- -ACGGCGCu---GCGG--------CGGGCaCGU--------UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 43334 | 0.66 | 0.74793 |
Target: 5'- cUGCCGCcucggaGCaCGCCC-UGC-GCAGCc -3' miRNA: 3'- -ACGGCGcug---CG-GCGGGcACGuUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 16095 | 0.66 | 0.74793 |
Target: 5'- uUGCCGgGucCGCCGCCCucGUuCGACccuaAGCu -3' miRNA: 3'- -ACGGCgCu-GCGGCGGG--CAcGUUG----UCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 159574 | 0.66 | 0.729103 |
Target: 5'- gGaCGUGGCGCUGCggcucCUGgaGCGACAGCa -3' miRNA: 3'- aCgGCGCUGCGGCG-----GGCa-CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 16852 | 0.66 | 0.719568 |
Target: 5'- cGCCGUaGAgGCC-CUCGUugaccuugucgGCGGCGGCa -3' miRNA: 3'- aCGGCG-CUgCGGcGGGCA-----------CGUUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 79399 | 0.66 | 0.73856 |
Target: 5'- cGCCGCgGGCGUgGCgaG-GCcGCGGCg -3' miRNA: 3'- aCGGCG-CUGCGgCGggCaCGuUGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 150298 | 0.66 | 0.729103 |
Target: 5'- cGCgGCGaACGCCcCCCGcuccuaccgGCuagauGCAGCg -3' miRNA: 3'- aCGgCGC-UGCGGcGGGCa--------CGu----UGUCG- -5' |
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24755 | 5' | -60.7 | NC_005264.1 | + | 24038 | 0.66 | 0.74793 |
Target: 5'- aGUCGUGACGCaCGUCUcuaugGCGgacACAGCc -3' miRNA: 3'- aCGGCGCUGCG-GCGGGca---CGU---UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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