miRNA display CGI


Results 41 - 60 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24755 5' -60.7 NC_005264.1 + 17333 0.67 0.690578
Target:  5'- uUGCCGUgGACGUCugcaguGCCUuccGCGGCAGCu -3'
miRNA:   3'- -ACGGCG-CUGCGG------CGGGca-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17369 0.7 0.505588
Target:  5'- gGCgGCGGCGCgGUCUGUGU-ACGuGCg -3'
miRNA:   3'- aCGgCGCUGCGgCGGGCACGuUGU-CG- -5'
24755 5' -60.7 NC_005264.1 + 17563 0.67 0.690578
Target:  5'- aGaCCGCGGC-CUcCCCGUGC--CAGCa -3'
miRNA:   3'- aC-GGCGCUGcGGcGGGCACGuuGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17694 0.66 0.74793
Target:  5'- gGCCGCGGCG--GCUCGUGuCGGguGUu -3'
miRNA:   3'- aCGGCGCUGCggCGGGCAC-GUUguCG- -5'
24755 5' -60.7 NC_005264.1 + 17736 0.68 0.601991
Target:  5'- cGCCGCGGCGCaaCCUaUGCcaaguucGCGGCa -3'
miRNA:   3'- aCGGCGCUGCGgcGGGcACGu------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 17950 0.71 0.448322
Target:  5'- cGCCGCG-CGCCGCCCGaagaauuauguuuuUGcCAACuuuauuccccuaGGCc -3'
miRNA:   3'- aCGGCGCuGCGGCGGGC--------------AC-GUUG------------UCG- -5'
24755 5' -60.7 NC_005264.1 + 18968 0.67 0.671011
Target:  5'- gGCCGCGgaaACGaUCGCCCGgGCAcACAuccGCu -3'
miRNA:   3'- aCGGCGC---UGC-GGCGGGCaCGU-UGU---CG- -5'
24755 5' -60.7 NC_005264.1 + 20053 0.67 0.651326
Target:  5'- aUGUCGCcACGCgGCCCcGcGUAGCgAGCa -3'
miRNA:   3'- -ACGGCGcUGCGgCGGG-CaCGUUG-UCG- -5'
24755 5' -60.7 NC_005264.1 + 21224 0.69 0.533948
Target:  5'- gGCCGCGACgGCUuUCCGcguUGaCGACGGCu -3'
miRNA:   3'- aCGGCGCUG-CGGcGGGC---AC-GUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 22164 0.69 0.524428
Target:  5'- cGCCGCGG-GCCGUaCGUcaCAACAGCc -3'
miRNA:   3'- aCGGCGCUgCGGCGgGCAc-GUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 23305 0.67 0.680813
Target:  5'- aGCCGCGAuCG-UGCCCaUGCuGCuGCu -3'
miRNA:   3'- aCGGCGCU-GCgGCGGGcACGuUGuCG- -5'
24755 5' -60.7 NC_005264.1 + 23754 0.8 0.115768
Target:  5'- aGCCGCGACGUCGUaauagGCGACAGCa -3'
miRNA:   3'- aCGGCGCUGCGGCGggca-CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 24038 0.66 0.74793
Target:  5'- aGUCGUGACGCaCGUCUcuaugGCGgacACAGCc -3'
miRNA:   3'- aCGGCGCUGCG-GCGGGca---CGU---UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 24413 0.69 0.542568
Target:  5'- aGCgCGCGGCGCguuaaacacgccCGCCCGgauugGCuugccgaAACAGCu -3'
miRNA:   3'- aCG-GCGCUGCG------------GCGGGCa----CG-------UUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 25553 0.66 0.729103
Target:  5'- cGcCCGCGuCGCCGCCaacGCcGCGGa -3'
miRNA:   3'- aC-GGCGCuGCGGCGGgcaCGuUGUCg -5'
24755 5' -60.7 NC_005264.1 + 26364 0.68 0.601991
Target:  5'- cGCCGCGGCagGCUGCgCG-GCGccgucucugagcGCGGCc -3'
miRNA:   3'- aCGGCGCUG--CGGCGgGCaCGU------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 27145 0.68 0.610858
Target:  5'- aGCCcgagggcCGGC-CCGUCCGUGCAggccgucuucacgGCGGCg -3'
miRNA:   3'- aCGGc------GCUGcGGCGGGCACGU-------------UGUCG- -5'
24755 5' -60.7 NC_005264.1 + 27848 0.66 0.74793
Target:  5'- cUGUCGCGGCGgcauCCGCCCaaUGCGccGCcGCc -3'
miRNA:   3'- -ACGGCGCUGC----GGCGGGc-ACGU--UGuCG- -5'
24755 5' -60.7 NC_005264.1 + 28353 0.67 0.690578
Target:  5'- uUGCCugcGCGAUGUCcccuGCCCGaauaaacGUAGCGGCg -3'
miRNA:   3'- -ACGG---CGCUGCGG----CGGGCa------CGUUGUCG- -5'
24755 5' -60.7 NC_005264.1 + 30114 0.69 0.543529
Target:  5'- aUGCgGgCGGCGCgGCaCCGaGCuGCGGCg -3'
miRNA:   3'- -ACGgC-GCUGCGgCG-GGCaCGuUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.