miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24757 3' -57.7 NC_005264.1 + 2510 0.67 0.822176
Target:  5'- cGC-GCGACUucaGCGcGGGGGGCgacuucccgagaCGGGGGu -3'
miRNA:   3'- -CGaUGCUGA---UGCuUCCCCCG------------GCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 2867 0.77 0.296355
Target:  5'- cGCUGCGGCUGCGAucgaccGGGGcgcggcgcGGCgGGGAGg -3'
miRNA:   3'- -CGAUGCUGAUGCU------UCCC--------CCGgCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 7775 0.68 0.750051
Target:  5'- --gGC-ACUgaGCGAGGGGGcGCUGGGAu -3'
miRNA:   3'- cgaUGcUGA--UGCUUCCCC-CGGCCCUu -5'
24757 3' -57.7 NC_005264.1 + 10873 0.66 0.862069
Target:  5'- -aUGCuGCUGCGA--GGGGCCGuGGGGa -3'
miRNA:   3'- cgAUGcUGAUGCUucCCCCGGC-CCUU- -5'
24757 3' -57.7 NC_005264.1 + 13451 0.68 0.74049
Target:  5'- cGCgGCGGCgcCGAAGGGGcuccuGCgGGGAc -3'
miRNA:   3'- -CGaUGCUGauGCUUCCCC-----CGgCCCUu -5'
24757 3' -57.7 NC_005264.1 + 30425 0.67 0.796167
Target:  5'- aGCUGCGGCggAgGAggucucGGGGGaGCCGcGGGc -3'
miRNA:   3'- -CGAUGCUGa-UgCU------UCCCC-CGGC-CCUu -5'
24757 3' -57.7 NC_005264.1 + 35958 0.66 0.83052
Target:  5'- cGCgccgACGAUgGCGAuucgccuggAGGGGGCgCGGaGAGc -3'
miRNA:   3'- -CGa---UGCUGaUGCU---------UCCCCCG-GCC-CUU- -5'
24757 3' -57.7 NC_005264.1 + 38597 0.66 0.869466
Target:  5'- cGCUAUGcCUaugccgagcgcgGCGAAGGGGuuaGCCaGGAAc -3'
miRNA:   3'- -CGAUGCuGA------------UGCUUCCCC---CGGcCCUU- -5'
24757 3' -57.7 NC_005264.1 + 40698 1.07 0.002725
Target:  5'- gGCUACGACUACGAAGGGGGCCGGGAAu -3'
miRNA:   3'- -CGAUGCUGAUGCUUCCCCCGGCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 40793 0.67 0.822176
Target:  5'- cGCUGCaaACUGCGggGGGcGCUGGa-- -3'
miRNA:   3'- -CGAUGc-UGAUGCuuCCCcCGGCCcuu -5'
24757 3' -57.7 NC_005264.1 + 43195 0.7 0.610985
Target:  5'- cCUGCGACgcgggccgGCGggGGGGGggGGGGc -3'
miRNA:   3'- cGAUGCUGa-------UGCuuCCCCCggCCCUu -5'
24757 3' -57.7 NC_005264.1 + 43495 0.68 0.768862
Target:  5'- uGCcGCGAUUugGggGGuGGGaggUGGGAGa -3'
miRNA:   3'- -CGaUGCUGAugCuuCC-CCCg--GCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 43671 0.66 0.862069
Target:  5'- cGCUGCGcGCcgGCGuuAAGGcGGccGCCGGGGAg -3'
miRNA:   3'- -CGAUGC-UGa-UGC--UUCC-CC--CGGCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 43838 0.68 0.74049
Target:  5'- cCUGCGGUUAUaaaGAAGGGGGCugccgCGGGGAa -3'
miRNA:   3'- cGAUGCUGAUG---CUUCCCCCG-----GCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 44098 0.71 0.590863
Target:  5'- aGCUugcccgaaGACUGgGGAGGGGGC-GGGAu -3'
miRNA:   3'- -CGAug------CUGAUgCUUCCCCCGgCCCUu -5'
24757 3' -57.7 NC_005264.1 + 53115 0.68 0.750051
Target:  5'- cGCU-CGGC----GAGGGGGCCGaGGAGg -3'
miRNA:   3'- -CGAuGCUGaugcUUCCCCCGGC-CCUU- -5'
24757 3' -57.7 NC_005264.1 + 105229 0.66 0.846673
Target:  5'- -gUACGACUGCGAGca-GGCCGcGGAGc -3'
miRNA:   3'- cgAUGCUGAUGCUUcccCCGGC-CCUU- -5'
24757 3' -57.7 NC_005264.1 + 114287 0.72 0.512037
Target:  5'- uGCggACGACgaagGCGAcGGGGGCgcgCGGGAc -3'
miRNA:   3'- -CGa-UGCUGa---UGCUuCCCCCG---GCCCUu -5'
24757 3' -57.7 NC_005264.1 + 121537 0.67 0.822176
Target:  5'- cGC-GCGACUucaGCGcGGGGGGCgacuucccgagaCGGGGGu -3'
miRNA:   3'- -CGaUGCUGA---UGCuUCCCCCG------------GCCCUU- -5'
24757 3' -57.7 NC_005264.1 + 121893 0.77 0.296355
Target:  5'- cGCUGCGGCUGCGAucgaccGGGGcgcggcgcGGCgGGGAGg -3'
miRNA:   3'- -CGAUGCUGAUGCU------UCCC--------CCGgCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.