Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 132478 | 0.68 | 0.74049 |
Target: 5'- cGCgGCGGCgcCGAAGGGGcuccuGCgGGGAc -3' miRNA: 3'- -CGaUGCUGauGCUUCCCC-----CGgCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 162222 | 0.7 | 0.610985 |
Target: 5'- cCUGCGACgcgggccgGCGggGGGGGggGGGGc -3' miRNA: 3'- cGAUGCUGa-------UGCuuCCCCCggCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 43195 | 0.7 | 0.610985 |
Target: 5'- cCUGCGACgcgggccgGCGggGGGGGggGGGGc -3' miRNA: 3'- cGAUGCUGa-------UGCuuCCCCCggCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 44098 | 0.71 | 0.590863 |
Target: 5'- aGCUugcccgaaGACUGgGGAGGGGGC-GGGAu -3' miRNA: 3'- -CGAug------CUGAUgCUUCCCCCGgCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 114287 | 0.72 | 0.512037 |
Target: 5'- uGCggACGACgaagGCGAcGGGGGCgcgCGGGAc -3' miRNA: 3'- -CGa-UGCUGa---UGCUuCCCCCG---GCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 135582 | 0.74 | 0.394796 |
Target: 5'- cGCUcGCGACUACG--GGuGGGUCGGGAc -3' miRNA: 3'- -CGA-UGCUGAUGCuuCC-CCCGGCCCUu -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 121893 | 0.77 | 0.296355 |
Target: 5'- cGCUGCGGCUGCGAucgaccGGGGcgcggcgcGGCgGGGAGg -3' miRNA: 3'- -CGAUGCUGAUGCU------UCCC--------CCGgCCCUU- -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 2867 | 0.77 | 0.296355 |
Target: 5'- cGCUGCGGCUGCGAucgaccGGGGcgcggcgcGGCgGGGAGg -3' miRNA: 3'- -CGAUGCUGAUGCU------UCCC--------CCGgCCCUU- -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 159724 | 1.07 | 0.002725 |
Target: 5'- gGCUACGACUACGAAGGGGGCCGGGAAu -3' miRNA: 3'- -CGAUGCUGAUGCUUCCCCCGGCCCUU- -5' |
|||||||
24757 | 3' | -57.7 | NC_005264.1 | + | 40698 | 1.07 | 0.002725 |
Target: 5'- gGCUACGACUACGAAGGGGGCCGGGAAu -3' miRNA: 3'- -CGAUGCUGAUGCUUCCCCCGGCCCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home