miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24758 3' -58.9 NC_005264.1 + 24377 0.68 0.7478
Target:  5'- aCCGGCUucgcgGCUCCCCcGGCGGcgaGGUa -3'
miRNA:   3'- -GGCUGG-----UGAGGGGuCUGCCaugCCGc -5'
24758 3' -58.9 NC_005264.1 + 79415 0.68 0.729113
Target:  5'- -aGGCCGCggcggaaCCCAGcguggGCGGUGCGGgGu -3'
miRNA:   3'- ggCUGGUGag-----GGGUC-----UGCCAUGCCgC- -5'
24758 3' -58.9 NC_005264.1 + 71218 0.71 0.54491
Target:  5'- aCGACCACcUCCCGGA-GGUGCaGCa -3'
miRNA:   3'- gGCUGGUGaGGGGUCUgCCAUGcCGc -5'
24758 3' -58.9 NC_005264.1 + 133361 0.66 0.857398
Target:  5'- gCGGCC-CUCCUC-GACGacuCGGCGa -3'
miRNA:   3'- gGCUGGuGAGGGGuCUGCcauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 41039 1.09 0.002123
Target:  5'- gCCGACCACUCCCCAGACGGUACGGCGc -3'
miRNA:   3'- -GGCUGGUGAGGGGUCUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77754 0.73 0.452903
Target:  5'- gCCGGCCAC-Ca-CAaACGGUGCGGCGg -3'
miRNA:   3'- -GGCUGGUGaGggGUcUGCCAUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 147717 0.73 0.479682
Target:  5'- -aGACCAUUCCCCAGAgaaaGGUG-GGCc -3'
miRNA:   3'- ggCUGGUGAGGGGUCUg---CCAUgCCGc -5'
24758 3' -58.9 NC_005264.1 + 18401 0.66 0.857398
Target:  5'- aCGACCACcgUUCCGGcCGGcGCaGGCGc -3'
miRNA:   3'- gGCUGGUGa-GGGGUCuGCCaUG-CCGC- -5'
24758 3' -58.9 NC_005264.1 + 97342 0.77 0.291559
Target:  5'- gCCGAUCACUCCguaUCGGACGGgggagagcaGCGGCGu -3'
miRNA:   3'- -GGCUGGUGAGG---GGUCUGCCa--------UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 159476 0.73 0.479682
Target:  5'- cUCG-CCGC-CCCCAGACGGaGCGGa- -3'
miRNA:   3'- -GGCuGGUGaGGGGUCUGCCaUGCCgc -5'
24758 3' -58.9 NC_005264.1 + 150585 0.71 0.582496
Target:  5'- aCGGCCAUUCCcgacguggaggcgCCAGA-GGUGgGGCGa -3'
miRNA:   3'- gGCUGGUGAGG-------------GGUCUgCCAUgCCGC- -5'
24758 3' -58.9 NC_005264.1 + 109485 0.66 0.849905
Target:  5'- aCGcuuGCCACgccgUCCUUAGGCuGGUugGGCu -3'
miRNA:   3'- gGC---UGGUG----AGGGGUCUG-CCAugCCGc -5'
24758 3' -58.9 NC_005264.1 + 19994 0.66 0.834383
Target:  5'- aCCGACCGCgcucgCUCgCAucCGGUugGcGCGa -3'
miRNA:   3'- -GGCUGGUGa----GGG-GUcuGCCAugC-CGC- -5'
24758 3' -58.9 NC_005264.1 + 83849 0.66 0.834383
Target:  5'- cUCGGCagguaACUCCUUAGuuuCGGcGCGGCa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCu--GCCaUGCCGc -5'
24758 3' -58.9 NC_005264.1 + 2978 0.66 0.826366
Target:  5'- uCCGACCACgaaUCCAucgagcgccGACuGGgcCGGCGg -3'
miRNA:   3'- -GGCUGGUGag-GGGU---------CUG-CCauGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 77794 0.66 0.826366
Target:  5'- aCGcACCGCggCgCAGACGGcauugACGGCGc -3'
miRNA:   3'- gGC-UGGUGagGgGUCUGCCa----UGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 123620 0.66 0.826366
Target:  5'- -aGGCC-CUCCCCGccaGCGccGCGGCGg -3'
miRNA:   3'- ggCUGGuGAGGGGUc--UGCcaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 125476 0.7 0.651928
Target:  5'- gCUGGCggagaACUCCUCGG-CGGcGCGGCGa -3'
miRNA:   3'- -GGCUGg----UGAGGGGUCuGCCaUGCCGC- -5'
24758 3' -58.9 NC_005264.1 + 158096 0.7 0.602962
Target:  5'- gCGGuCCAC-CCCCGGACGccggcuCGGCGg -3'
miRNA:   3'- gGCU-GGUGaGGGGUCUGCcau---GCCGC- -5'
24758 3' -58.9 NC_005264.1 + 82968 0.7 0.602962
Target:  5'- gCCG-CCGCgcCCCCGuGACgaaGGUACGGUGa -3'
miRNA:   3'- -GGCuGGUGa-GGGGU-CUG---CCAUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.