miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24759 3' -61 NC_005264.1 + 120720 0.66 0.737679
Target:  5'- -gGCGGUCGGG--CGGAGGACg--GUg -3'
miRNA:   3'- agCGCCAGCCCcgGUCUCCUGagaCA- -5'
24759 3' -61 NC_005264.1 + 31166 0.66 0.728247
Target:  5'- uUCGUGuGaCgGGGGCCGGAGGGCg---- -3'
miRNA:   3'- -AGCGC-CaG-CCCCGGUCUCCUGagaca -5'
24759 3' -61 NC_005264.1 + 150193 0.66 0.728247
Target:  5'- uUCGUGuGaCgGGGGCCGGAGGGCg---- -3'
miRNA:   3'- -AGCGC-CaG-CCCCGGUCUCCUGagaca -5'
24759 3' -61 NC_005264.1 + 944 0.66 0.718738
Target:  5'- cUCGuCGGg-GGGGCUcGAGGACUUa-- -3'
miRNA:   3'- -AGC-GCCagCCCCGGuCUCCUGAGaca -5'
24759 3' -61 NC_005264.1 + 150628 0.66 0.718738
Target:  5'- aUCGUac-CGGGGCUGGucGACUCUGg -3'
miRNA:   3'- -AGCGccaGCCCCGGUCucCUGAGACa -5'
24759 3' -61 NC_005264.1 + 119970 0.66 0.718738
Target:  5'- cUCGuCGGg-GGGGCUcGAGGACUUa-- -3'
miRNA:   3'- -AGC-GCCagCCCCGGuCUCCUGAGaca -5'
24759 3' -61 NC_005264.1 + 132638 0.66 0.699523
Target:  5'- aUCGCGGUCGGGacGCgGGcaGGGGCggcgGUa -3'
miRNA:   3'- -AGCGCCAGCCC--CGgUC--UCCUGaga-CA- -5'
24759 3' -61 NC_005264.1 + 13611 0.66 0.699523
Target:  5'- aUCGCGGUCGGGacGCgGGcaGGGGCggcgGUa -3'
miRNA:   3'- -AGCGCCAGCCC--CGgUC--UCCUGaga-CA- -5'
24759 3' -61 NC_005264.1 + 21449 0.66 0.689833
Target:  5'- -aGUGGUCGGGGCuCGcGAuGGugUCg-- -3'
miRNA:   3'- agCGCCAGCCCCG-GU-CU-CCugAGaca -5'
24759 3' -61 NC_005264.1 + 116524 0.67 0.680099
Target:  5'- uUCGCGGUCuucgguGGGGUCGuuGGGGGCUa--- -3'
miRNA:   3'- -AGCGCCAG------CCCCGGU--CUCCUGAgaca -5'
24759 3' -61 NC_005264.1 + 70061 0.67 0.640873
Target:  5'- -gGgGGUCGGGGaCCAGGGG---CUGUu -3'
miRNA:   3'- agCgCCAGCCCC-GGUCUCCugaGACA- -5'
24759 3' -61 NC_005264.1 + 122640 0.69 0.562543
Target:  5'- cCGCGG--GGGGCCGcGAGGGCgggcgcgCUGa -3'
miRNA:   3'- aGCGCCagCCCCGGU-CUCCUGa------GACa -5'
24759 3' -61 NC_005264.1 + 148122 0.69 0.562543
Target:  5'- aUCGUcgGGUCGGGGCCGuuaaAGuGCUCUGc -3'
miRNA:   3'- -AGCG--CCAGCCCCGGUc---UCcUGAGACa -5'
24759 3' -61 NC_005264.1 + 3613 0.69 0.562543
Target:  5'- cCGCGG--GGGGCCGcGAGGGCgggcgcgCUGa -3'
miRNA:   3'- aGCGCCagCCCCGGU-CUCCUGa------GACa -5'
24759 3' -61 NC_005264.1 + 123126 0.7 0.477884
Target:  5'- gUCGCGGcacgaCGGGGCC-GAGGGugucccCUCUGc -3'
miRNA:   3'- -AGCGCCa----GCCCCGGuCUCCU------GAGACa -5'
24759 3' -61 NC_005264.1 + 4099 0.7 0.477884
Target:  5'- gUCGCGGcacgaCGGGGCC-GAGGGugucccCUCUGc -3'
miRNA:   3'- -AGCGCCa----GCCCCGGuCUCCU------GAGACa -5'
24759 3' -61 NC_005264.1 + 33810 0.71 0.408244
Target:  5'- gCGCGGgcuaCGGGGCUcgucGAGGGCUCg-- -3'
miRNA:   3'- aGCGCCa---GCCCCGGu---CUCCUGAGaca -5'
24759 3' -61 NC_005264.1 + 152836 0.71 0.408244
Target:  5'- gCGCGGgcuaCGGGGCUcgucGAGGGCUCg-- -3'
miRNA:   3'- aGCGCCa---GCCCCGGu---CUCCUGAGaca -5'
24759 3' -61 NC_005264.1 + 160176 1.07 0.001457
Target:  5'- cUCGCGGUCGGGGCCAGAGGACUCUGUa -3'
miRNA:   3'- -AGCGCCAGCCCCGGUCUCCUGAGACA- -5'
24759 3' -61 NC_005264.1 + 41149 1.07 0.001457
Target:  5'- cUCGCGGUCGGGGCCAGAGGACUCUGUa -3'
miRNA:   3'- -AGCGCCAGCCCCGGUCUCCUGAGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.