miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24760 3' -53.1 NC_005264.1 + 148287 0.66 0.981756
Target:  5'- gCGGGaGAUUCUGGAGACcgCGcGcGUGCg -3'
miRNA:   3'- -GCCUcCUGAGACUUCUGa-GC-CuCAUG- -5'
24760 3' -53.1 NC_005264.1 + 143594 0.66 0.981756
Target:  5'- cCGGAGGGaaCgaGAAuGGCgCGGGGUACa -3'
miRNA:   3'- -GCCUCCUgaGa-CUU-CUGaGCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 117815 0.66 0.979612
Target:  5'- uCGGAucguguucaacGGGUUCgaggGGAGGCgcggCGGAGUGCg -3'
miRNA:   3'- -GCCU-----------CCUGAGa---CUUCUGa---GCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 50254 0.66 0.97206
Target:  5'- uGGuGGcCUCUGggGACgccauggccgCGGAGa-- -3'
miRNA:   3'- gCCuCCuGAGACuuCUGa---------GCCUCaug -5'
24760 3' -53.1 NC_005264.1 + 119893 0.67 0.966017
Target:  5'- aGGGGGACaccaUCUacAAGcGCUUGGGGUACu -3'
miRNA:   3'- gCCUCCUG----AGAc-UUC-UGAGCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 116534 0.68 0.94703
Target:  5'- uCGGuGGGgUCguUGggGGCUaCGGAGgcgGCg -3'
miRNA:   3'- -GCCuCCUgAG--ACuuCUGA-GCCUCa--UG- -5'
24760 3' -53.1 NC_005264.1 + 140225 0.69 0.920417
Target:  5'- gGGAGGcaagaccguacacuACUCUGAGGuCUCGGcgacGGUGa -3'
miRNA:   3'- gCCUCC--------------UGAGACUUCuGAGCC----UCAUg -5'
24760 3' -53.1 NC_005264.1 + 102098 0.69 0.904228
Target:  5'- aGGAcGAgUCUGAGGACggcuggCGGcGGUACg -3'
miRNA:   3'- gCCUcCUgAGACUUCUGa-----GCC-UCAUG- -5'
24760 3' -53.1 NC_005264.1 + 950 0.7 0.884199
Target:  5'- gGGGGGGCUC-GAGGACUUaGAGg-- -3'
miRNA:   3'- gCCUCCUGAGaCUUCUGAGcCUCaug -5'
24760 3' -53.1 NC_005264.1 + 102555 0.7 0.884199
Target:  5'- ---uGGACUCUGAGGACaa-GAGUGCa -3'
miRNA:   3'- gccuCCUGAGACUUCUGagcCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 119976 0.7 0.884199
Target:  5'- gGGGGGGCUC-GAGGACUUaGAGg-- -3'
miRNA:   3'- gCCUCCUGAGaCUUCUGAGcCUCaug -5'
24760 3' -53.1 NC_005264.1 + 91325 0.7 0.884199
Target:  5'- cCGGAGGcgcugcgguugGCUgUGAAGGCUgGGucaauGUACg -3'
miRNA:   3'- -GCCUCC-----------UGAgACUUCUGAgCCu----CAUG- -5'
24760 3' -53.1 NC_005264.1 + 2544 0.7 0.854325
Target:  5'- aCGGGGGuugCUGu--ACUCGGGGUACu -3'
miRNA:   3'- -GCCUCCugaGACuucUGAGCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 121571 0.7 0.854325
Target:  5'- aCGGGGGuugCUGu--ACUCGGGGUACu -3'
miRNA:   3'- -GCCUCCugaGACuucUGAGCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 132482 0.71 0.811534
Target:  5'- gCGGcgccgaaGGGGCUCcugcGggGACUCGGGGgACa -3'
miRNA:   3'- -GCC-------UCCUGAGa---CuuCUGAGCCUCaUG- -5'
24760 3' -53.1 NC_005264.1 + 13455 0.71 0.811534
Target:  5'- gCGGcgccgaaGGGGCUCcugcGggGACUCGGGGgACa -3'
miRNA:   3'- -GCC-------UCCUGAGa---CuuCUGAGCCUCaUG- -5'
24760 3' -53.1 NC_005264.1 + 160191 0.73 0.74699
Target:  5'- -aGAGGACUCUGuAGACgagaCGGAG-ACa -3'
miRNA:   3'- gcCUCCUGAGACuUCUGa---GCCUCaUG- -5'
24760 3' -53.1 NC_005264.1 + 41164 0.73 0.74699
Target:  5'- -aGAGGACUCUGuAGACgagaCGGAG-ACa -3'
miRNA:   3'- gcCUCCUGAGACuUCUGa---GCCUCaUG- -5'
24760 3' -53.1 NC_005264.1 + 160273 1.09 0.006
Target:  5'- gCGGAGGACUCUGAAGACUCGGAGUACc -3'
miRNA:   3'- -GCCUCCUGAGACUUCUGAGCCUCAUG- -5'
24760 3' -53.1 NC_005264.1 + 41246 1.09 0.006
Target:  5'- gCGGAGGACUCUGAAGACUCGGAGUACc -3'
miRNA:   3'- -GCCUCCUGAGACUUCUGAGCCUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.