Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24760 | 5' | -57.3 | NC_005264.1 | + | 122194 | 0.66 | 0.894865 |
Target: 5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3' miRNA: 3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 51784 | 0.66 | 0.894865 |
Target: 5'- gCGGCGGCaCUUCGUC-CGGcGAGUcCGCg -3' miRNA: 3'- -GUCGUUG-GGGGCAGaGCCcUUCA-GCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 146079 | 0.66 | 0.894865 |
Target: 5'- aCAGCGcGCCCCCG-CgCGGGucuuGGUggacuaCGCa -3' miRNA: 3'- -GUCGU-UGGGGGCaGaGCCCu---UCA------GCG- -5' |
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24760 | 5' | -57.3 | NC_005264.1 | + | 3167 | 0.66 | 0.894865 |
Target: 5'- aCGGCGACCCUccgCGUCgcgacggcgCGgGGAAGggcuuauuUCGCa -3' miRNA: 3'- -GUCGUUGGGG---GCAGa--------GC-CCUUC--------AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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