miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24760 5' -57.3 NC_005264.1 + 61081 0.68 0.802917
Target:  5'- gGGCcGCCaCCaCGUCcuUUGGGGAG-CGCg -3'
miRNA:   3'- gUCGuUGG-GG-GCAG--AGCCCUUCaGCG- -5'
24760 5' -57.3 NC_005264.1 + 161939 0.68 0.802917
Target:  5'- cCAGCGGCCCgCGaCaCGGGGccguacacccAGUCGUa -3'
miRNA:   3'- -GUCGUUGGGgGCaGaGCCCU----------UCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 132037 0.68 0.79412
Target:  5'- -cGCGACUCCUGUCUgggccCGGG-AGUCa- -3'
miRNA:   3'- guCGUUGGGGGCAGA-----GCCCuUCAGcg -5'
24760 5' -57.3 NC_005264.1 + 68534 0.68 0.776113
Target:  5'- aGGCAGgCUuuGUCUCGGG--GUCGa -3'
miRNA:   3'- gUCGUUgGGggCAGAGCCCuuCAGCg -5'
24760 5' -57.3 NC_005264.1 + 84134 0.68 0.776113
Target:  5'- gCGGCAGCUCgCGagcCcCGGGAaguGGUCGCa -3'
miRNA:   3'- -GUCGUUGGGgGCa--GaGCCCU---UCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 121794 0.69 0.757611
Target:  5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3'
miRNA:   3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5'
24760 5' -57.3 NC_005264.1 + 2768 0.69 0.757611
Target:  5'- cCGGC-GCCguaCCGUCUgGGGAguGGUCGg -3'
miRNA:   3'- -GUCGuUGGg--GGCAGAgCCCU--UCAGCg -5'
24760 5' -57.3 NC_005264.1 + 18701 0.69 0.748197
Target:  5'- aAGCAcucuuacgguGCCCCCGUa-UGGGuucuuGGGUCGCu -3'
miRNA:   3'- gUCGU----------UGGGGGCAgaGCCC-----UUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 35518 0.69 0.748197
Target:  5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3'
miRNA:   3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5'
24760 5' -57.3 NC_005264.1 + 39747 0.69 0.748197
Target:  5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3'
miRNA:   3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5'
24760 5' -57.3 NC_005264.1 + 158773 0.69 0.748197
Target:  5'- -uGCAACagCCCCGcUgUCGGGAGaucccGUCGCc -3'
miRNA:   3'- guCGUUG--GGGGC-AgAGCCCUU-----CAGCG- -5'
24760 5' -57.3 NC_005264.1 + 154545 0.69 0.748197
Target:  5'- gCAGguGCCCCCGUCgcccaCGGGcgccuuGUUGg -3'
miRNA:   3'- -GUCguUGGGGGCAGa----GCCCuu----CAGCg -5'
24760 5' -57.3 NC_005264.1 + 37468 0.69 0.735813
Target:  5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3'
miRNA:   3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5'
24760 5' -57.3 NC_005264.1 + 156495 0.69 0.735813
Target:  5'- -uGCAGCCCCUGUCccgCGuaucgcacagcuacGGggGcUCGCg -3'
miRNA:   3'- guCGUUGGGGGCAGa--GC--------------CCuuC-AGCG- -5'
24760 5' -57.3 NC_005264.1 + 148866 0.7 0.6611
Target:  5'- gGGCGACCCCgCGUCUCGcucgucuuccucGUCGCc -3'
miRNA:   3'- gUCGUUGGGG-GCAGAGCccuu--------CAGCG- -5'
24760 5' -57.3 NC_005264.1 + 62626 0.71 0.640073
Target:  5'- gAGCAacugcGCCCCgCGgagCUCaGcGAAGUCGCg -3'
miRNA:   3'- gUCGU-----UGGGG-GCa--GAGcC-CUUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 13263 0.71 0.627039
Target:  5'- gAGCAGCCCCCcuccgcccggggcuGUCcgCGGGAgAGUCa- -3'
miRNA:   3'- gUCGUUGGGGG--------------CAGa-GCCCU-UCAGcg -5'
24760 5' -57.3 NC_005264.1 + 124102 0.71 0.600006
Target:  5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3'
miRNA:   3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5'
24760 5' -57.3 NC_005264.1 + 107718 0.71 0.600006
Target:  5'- aCGGCGgggugucgaACCCUCGUggCUUGGGcAAGUUGCg -3'
miRNA:   3'- -GUCGU---------UGGGGGCA--GAGCCC-UUCAGCG- -5'
24760 5' -57.3 NC_005264.1 + 5075 0.71 0.600006
Target:  5'- aGGCGGCCagCCCGUC-CGGGGAGggGUc -3'
miRNA:   3'- gUCGUUGG--GGGCAGaGCCCUUCagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.