Results 61 - 76 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 3' | -57.9 | NC_005264.1 | + | 125037 | 0.66 | 0.844523 |
Target: 5'- cCCCgacgggcggggaGGCUCCGGGGAaAACcaacGGCGCGa -3' miRNA: 3'- -GGG------------UCGAGGCCCUUcUUGc---CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 41650 | 0.66 | 0.844523 |
Target: 5'- -gCAGCgcggCCGGGucuAAGGACGuGCGCAUc -3' miRNA: 3'- ggGUCGa---GGCCC---UUCUUGCcCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 160452 | 0.66 | 0.836544 |
Target: 5'- gCCGGCgCCGGGcuccuGCGGGCGacggcCACu -3' miRNA: 3'- gGGUCGaGGCCCuucu-UGCCCGU-----GUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 130369 | 0.66 | 0.836544 |
Target: 5'- aCC-GUUCUGGcGAGGAACugccaucugGGGCAUGCg -3' miRNA: 3'- gGGuCGAGGCC-CUUCUUG---------CCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 93280 | 0.66 | 0.836544 |
Target: 5'- cCCCGGCUUCaGuGGAGGAAUGccucaaGGCGCu- -3' miRNA: 3'- -GGGUCGAGG-C-CCUUCUUGC------CCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 106858 | 0.66 | 0.836544 |
Target: 5'- uUCAuCUgCGGGGucauGGGCGGGCACGa -3' miRNA: 3'- gGGUcGAgGCCCUu---CUUGCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 14048 | 0.66 | 0.836544 |
Target: 5'- aCgUGGCggggCCGGGuGGGAACGuGCACGCc -3' miRNA: 3'- -GgGUCGa---GGCCC-UUCUUGCcCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 150782 | 0.67 | 0.828387 |
Target: 5'- gCCUuuGGCUcgcaCCGGGAuGGuucGCGGGCGCu- -3' miRNA: 3'- -GGG--UCGA----GGCCCUuCU---UGCCCGUGug -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 543 | 0.67 | 0.819216 |
Target: 5'- aCCCAGCcaUCC-GGAAGAgacggcgACGuGGUACAg -3' miRNA: 3'- -GGGUCG--AGGcCCUUCU-------UGC-CCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 46755 | 0.67 | 0.811566 |
Target: 5'- aUCuGUaCCGGGuAG-AUGGGCACGCg -3' miRNA: 3'- gGGuCGaGGCCCuUCuUGCCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 157736 | 0.67 | 0.811566 |
Target: 5'- uCCCAGCUCgcccccaGGcguaGAGGAccccuccccggACGGGCugGCc -3' miRNA: 3'- -GGGUCGAGg------CC----CUUCU-----------UGCCCGugUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 98231 | 0.67 | 0.802917 |
Target: 5'- gCCGcGCUgCGGaGAGGuuAUGGGCGCAa -3' miRNA: 3'- gGGU-CGAgGCC-CUUCu-UGCCCGUGUg -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 58665 | 0.67 | 0.802917 |
Target: 5'- gCCAGCUCCucaacuugcuGGAGGA---GGCACGCg -3' miRNA: 3'- gGGUCGAGGc---------CCUUCUugcCCGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 16570 | 0.67 | 0.802917 |
Target: 5'- -gCGGCgCCGGGgcG-GCGGcGCACAUg -3' miRNA: 3'- ggGUCGaGGCCCuuCuUGCC-CGUGUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 150545 | 0.67 | 0.802917 |
Target: 5'- cUCCAgGCUCgggCGGGGAGGGCcguugggguggGGGCGgACg -3' miRNA: 3'- -GGGU-CGAG---GCCCUUCUUG-----------CCCGUgUG- -5' |
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24761 | 3' | -57.9 | NC_005264.1 | + | 160389 | 1.11 | 0.001473 |
Target: 5'- gCCCAGCUCCGGGAAGAACGGGCACACg -3' miRNA: 3'- -GGGUCGAGGCCCUUCUUGCCCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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