miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24761 5' -55.6 NC_005264.1 + 160426 1.1 0.003065
Target:  5'- gCGGCCUCCGCUUUCUUCCUAGGCAGGc -3'
miRNA:   3'- -GCCGGAGGCGAAAGAAGGAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 41399 1.1 0.003065
Target:  5'- gCGGCCUCCGCUUUCUUCCUAGGCAGGc -3'
miRNA:   3'- -GCCGGAGGCGAAAGAAGGAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 34891 0.82 0.192088
Target:  5'- aGGCCgCCGCcUUCUUCgaGGGCAGGg -3'
miRNA:   3'- gCCGGaGGCGaAAGAAGgaUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 93070 0.75 0.476107
Target:  5'- gCGGCCUCCGCccgaaUUCgU-GGCAGGg -3'
miRNA:   3'- -GCCGGAGGCGaaag-AAGgAuCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 4452 0.74 0.553792
Target:  5'- aGGCCUCUgGCUgcgCgaUUCUGGGCGGGa -3'
miRNA:   3'- gCCGGAGG-CGAaa-Ga-AGGAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 123479 0.74 0.553792
Target:  5'- aGGCCUCUgGCUgcgCgaUUCUGGGCGGGa -3'
miRNA:   3'- gCCGGAGG-CGAaa-Ga-AGGAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 47688 0.7 0.731375
Target:  5'- gCGGUUUCCGCUUUUgcgCCgucgaaaucuuuGGCGGGa -3'
miRNA:   3'- -GCCGGAGGCGAAAGaa-GGau----------CCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 97903 0.7 0.74499
Target:  5'- gCGGCCUCgcgaaggcucuCGCUUUCUUCCacaucgaaugcGGGCuGGc -3'
miRNA:   3'- -GCCGGAG-----------GCGAAAGAAGGa----------UCCGuCC- -5'
24761 5' -55.6 NC_005264.1 + 58440 0.7 0.74499
Target:  5'- aGGUCUCCGCcUUCgaugUCCUuGGCGu- -3'
miRNA:   3'- gCCGGAGGCGaAAGa---AGGAuCCGUcc -5'
24761 5' -55.6 NC_005264.1 + 3807 0.69 0.809685
Target:  5'- uGGCggUCCGCgagUUCgggCCcGGGCGGGg -3'
miRNA:   3'- gCCGg-AGGCGa--AAGaa-GGaUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 122833 0.69 0.809685
Target:  5'- uGGCggUCCGCgagUUCgggCCcGGGCGGGg -3'
miRNA:   3'- gCCGg-AGGCGa--AAGaa-GGaUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 3121 0.68 0.843332
Target:  5'- aGGUCUCgGUUUcucguacacaugUCaUCCgUGGGCAGGg -3'
miRNA:   3'- gCCGGAGgCGAA------------AGaAGG-AUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 58694 0.68 0.851285
Target:  5'- cCGGCCUcuaugacggCCGCg--UUuaCUAGGCGGGc -3'
miRNA:   3'- -GCCGGA---------GGCGaaaGAagGAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 139482 0.68 0.859042
Target:  5'- uCGGaCCaucgagCaCGCUUUCgaUCgCUAGGCAGGa -3'
miRNA:   3'- -GCC-GGa-----G-GCGAAAGa-AG-GAUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 68503 0.68 0.866595
Target:  5'- gCGGCgaCgGCUUUCUgggguaCCUugcgguAGGCAGGc -3'
miRNA:   3'- -GCCGgaGgCGAAAGAa-----GGA------UCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 95395 0.67 0.873938
Target:  5'- uGGCCg-CGCUggugcaggggCUUCagaUAGGCGGGa -3'
miRNA:   3'- gCCGGagGCGAaa--------GAAGg--AUCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 95829 0.67 0.887976
Target:  5'- aGGCCgCCGCUccg-UCC-AGGCAGc -3'
miRNA:   3'- gCCGGaGGCGAaagaAGGaUCCGUCc -5'
24761 5' -55.6 NC_005264.1 + 110122 0.67 0.907345
Target:  5'- gGGCCgagagccgCCGCg--CUUUUggGGGCGGGc -3'
miRNA:   3'- gCCGGa-------GGCGaaaGAAGGa-UCCGUCC- -5'
24761 5' -55.6 NC_005264.1 + 72752 0.67 0.907345
Target:  5'- gGGCCugUCCGCUgggaUCUgguUUCUGGcGCAGa -3'
miRNA:   3'- gCCGG--AGGCGAa---AGA---AGGAUC-CGUCc -5'
24761 5' -55.6 NC_005264.1 + 47034 0.66 0.919095
Target:  5'- gCGGCCUcCCGCggUCccacgugUCUaUGGGCuGGg -3'
miRNA:   3'- -GCCGGA-GGCGaaAGa------AGG-AUCCGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.