Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24761 | 5' | -55.6 | NC_005264.1 | + | 47688 | 0.7 | 0.731375 |
Target: 5'- gCGGUUUCCGCUUUUgcgCCgucgaaaucuuuGGCGGGa -3' miRNA: 3'- -GCCGGAGGCGAAAGaa-GGau----------CCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 123479 | 0.74 | 0.553792 |
Target: 5'- aGGCCUCUgGCUgcgCgaUUCUGGGCGGGa -3' miRNA: 3'- gCCGGAGG-CGAaa-Ga-AGGAUCCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 4452 | 0.74 | 0.553792 |
Target: 5'- aGGCCUCUgGCUgcgCgaUUCUGGGCGGGa -3' miRNA: 3'- gCCGGAGG-CGAaa-Ga-AGGAUCCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 93070 | 0.75 | 0.476107 |
Target: 5'- gCGGCCUCCGCccgaaUUCgU-GGCAGGg -3' miRNA: 3'- -GCCGGAGGCGaaag-AAGgAuCCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 34891 | 0.82 | 0.192088 |
Target: 5'- aGGCCgCCGCcUUCUUCgaGGGCAGGg -3' miRNA: 3'- gCCGGaGGCGaAAGAAGgaUCCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 160426 | 1.1 | 0.003065 |
Target: 5'- gCGGCCUCCGCUUUCUUCCUAGGCAGGc -3' miRNA: 3'- -GCCGGAGGCGAAAGAAGGAUCCGUCC- -5' |
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24761 | 5' | -55.6 | NC_005264.1 | + | 41399 | 1.1 | 0.003065 |
Target: 5'- gCGGCCUCCGCUUUCUUCCUAGGCAGGc -3' miRNA: 3'- -GCCGGAGGCGAAAGAAGGAUCCGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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