miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24763 3' -63.5 NC_005264.1 + 137165 0.66 0.590926
Target:  5'- --cGUCCCgUCCCUUcuGCUgCCCCCa -3'
miRNA:   3'- aaaCGGGGgGGGGAAu-UGGgGGGGGg -5'
24763 3' -63.5 NC_005264.1 + 152436 0.66 0.590926
Target:  5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3'
miRNA:   3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 143564 0.66 0.590926
Target:  5'- ---aCCCUCCCCCgacucuGCCgUCCCCg -3'
miRNA:   3'- aaacGGGGGGGGGaau---UGGgGGGGGg -5'
24763 3' -63.5 NC_005264.1 + 33409 0.66 0.590926
Target:  5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3'
miRNA:   3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 108342 0.66 0.590926
Target:  5'- --cGCCgCCUCCCCagAACCCCUuuUg -3'
miRNA:   3'- aaaCGG-GGGGGGGaaUUGGGGGggGg -5'
24763 3' -63.5 NC_005264.1 + 28918 0.66 0.590926
Target:  5'- --cGCCCCCaauauuaUCCUccuCCCaCCCCCa -3'
miRNA:   3'- aaaCGGGGGg------GGGAauuGGGgGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 106329 0.66 0.590926
Target:  5'- --gGCgaCCCCUCCacagAGCCCCagcaaCCCCu -3'
miRNA:   3'- aaaCGg-GGGGGGGaa--UUGGGGg----GGGG- -5'
24763 3' -63.5 NC_005264.1 + 42797 0.66 0.585102
Target:  5'- ---uCCCCCCCgCUaGACCCCCUgagcuugucuauugcUCCg -3'
miRNA:   3'- aaacGGGGGGGgGAaUUGGGGGG---------------GGG- -5'
24763 3' -63.5 NC_005264.1 + 129169 0.66 0.581226
Target:  5'- --aGCCUCCgCCCCagauucauACCCgCCaCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaau-----UGGGgGG-GGG- -5'
24763 3' -63.5 NC_005264.1 + 10142 0.66 0.581226
Target:  5'- --aGCCUCCgCCCCagauucauACCCgCCaCCCg -3'
miRNA:   3'- aaaCGGGGG-GGGGaau-----UGGGgGG-GGG- -5'
24763 3' -63.5 NC_005264.1 + 131947 0.66 0.571558
Target:  5'- --aGUCCUCCCCC--GACgCgUCCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGaaUUGgGgGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 12921 0.66 0.571558
Target:  5'- --aGUCCUCCCCC--GACgCgUCCCCg -3'
miRNA:   3'- aaaCGGGGGGGGGaaUUGgGgGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 38519 0.66 0.56193
Target:  5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3'
miRNA:   3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5'
24763 3' -63.5 NC_005264.1 + 157546 0.66 0.56193
Target:  5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3'
miRNA:   3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5'
24763 3' -63.5 NC_005264.1 + 30272 0.66 0.542812
Target:  5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 149299 0.66 0.542812
Target:  5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3'
miRNA:   3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5'
24763 3' -63.5 NC_005264.1 + 98162 0.67 0.533333
Target:  5'- --gGCCUgCCCgCCggcaGGCCCaaaCCCCCu -3'
miRNA:   3'- aaaCGGGgGGG-GGaa--UUGGGg--GGGGG- -5'
24763 3' -63.5 NC_005264.1 + 96131 0.67 0.523914
Target:  5'- gUUGCUCCCCggcgaCacgUAguacGCCCCCCgCCCg -3'
miRNA:   3'- aAACGGGGGGg----Gga-AU----UGGGGGG-GGG- -5'
24763 3' -63.5 NC_005264.1 + 141285 0.67 0.523914
Target:  5'- -cUGCCCCaaCCCCCaguGCCgUCgCCCa -3'
miRNA:   3'- aaACGGGG--GGGGGaauUGGgGGgGGG- -5'
24763 3' -63.5 NC_005264.1 + 79837 0.67 0.523914
Target:  5'- -aUGCCCUCCaaCagAACCCgCCCCa -3'
miRNA:   3'- aaACGGGGGGggGaaUUGGGgGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.