Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24763 | 3' | -63.5 | NC_005264.1 | + | 33409 | 0.66 | 0.590926 |
Target: 5'- -cUGCCacgaUCCCgCUcgacGAUCCCUCCCCg -3' miRNA: 3'- aaACGGg---GGGGgGAa---UUGGGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 46396 | 0.68 | 0.451211 |
Target: 5'- --cGCCCCgaucgucgCCCCCgcGGCCagaCgCCCCCa -3' miRNA: 3'- aaaCGGGG--------GGGGGaaUUGGg--G-GGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 42025 | 0.68 | 0.433902 |
Target: 5'- ---uUCCCCCUCCUcc-CCCUCCUCCg -3' miRNA: 3'- aaacGGGGGGGGGAauuGGGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 42991 | 1.07 | 0.000782 |
Target: 5'- uUUUGCCCCCCCCCUUAACCCCCCCCCc -3' miRNA: 3'- -AAACGGGGGGGGGAAUUGGGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 10142 | 0.66 | 0.581226 |
Target: 5'- --aGCCUCCgCCCCagauucauACCCgCCaCCCg -3' miRNA: 3'- aaaCGGGGG-GGGGaau-----UGGGgGG-GGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 12921 | 0.66 | 0.571558 |
Target: 5'- --aGUCCUCCCCC--GACgCgUCCCCg -3' miRNA: 3'- aaaCGGGGGGGGGaaUUGgGgGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 30272 | 0.66 | 0.542812 |
Target: 5'- --cGCUCUCCUCUUccuCCUCCCCCUc -3' miRNA: 3'- aaaCGGGGGGGGGAauuGGGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 98162 | 0.67 | 0.533333 |
Target: 5'- --gGCCUgCCCgCCggcaGGCCCaaaCCCCCu -3' miRNA: 3'- aaaCGGGgGGG-GGaa--UUGGGg--GGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 30247 | 0.67 | 0.496059 |
Target: 5'- --cGCCCUUCCCCggu-CCCgCCCgCg -3' miRNA: 3'- aaaCGGGGGGGGGaauuGGGgGGGgG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 31248 | 0.68 | 0.466218 |
Target: 5'- -gUGUCCCCCCUCagcggUAucuucgcggcgaacGCCCCCCgCUCc -3' miRNA: 3'- aaACGGGGGGGGGa----AU--------------UGGGGGG-GGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 70774 | 0.67 | 0.486012 |
Target: 5'- --cGCCCCUcgugcguacuagaCUCCUUAACUcuguaCUCCCCCg -3' miRNA: 3'- aaaCGGGGG-------------GGGGAAUUGG-----GGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 128347 | 0.67 | 0.514558 |
Target: 5'- --cGCCCCCCauuCCCgccgAACgUCCUCCUg -3' miRNA: 3'- aaaCGGGGGG---GGGaa--UUGgGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 108342 | 0.66 | 0.590926 |
Target: 5'- --cGCCgCCUCCCCagAACCCCUuuUg -3' miRNA: 3'- aaaCGG-GGGGGGGaaUUGGGGGggGg -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 146439 | 0.68 | 0.476964 |
Target: 5'- cUUGCCUCCCCgagugccaaugcgCCacgggcauCCCCUCCCCc -3' miRNA: 3'- aAACGGGGGGG-------------GGaauu----GGGGGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 28918 | 0.66 | 0.590926 |
Target: 5'- --cGCCCCCaauauuaUCCUccuCCCaCCCCCa -3' miRNA: 3'- aaaCGGGGGg------GGGAauuGGGgGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 40926 | 0.67 | 0.523914 |
Target: 5'- --cGCCCuCCCCgCCgc-GCCgCgCCCCg -3' miRNA: 3'- aaaCGGG-GGGG-GGaauUGGgGgGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 12627 | 0.68 | 0.468892 |
Target: 5'- --aGCCCCCCguCCCacucgcucGCCCUccggCCCCCg -3' miRNA: 3'- aaaCGGGGGG--GGGaau-----UGGGG----GGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 299 | 0.68 | 0.443375 |
Target: 5'- --aGCCCUUCCUCggucucccaccuCCCaCCCCCCa -3' miRNA: 3'- aaaCGGGGGGGGGaauu--------GGG-GGGGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 106329 | 0.66 | 0.590926 |
Target: 5'- --gGCgaCCCCUCCacagAGCCCCagcaaCCCCu -3' miRNA: 3'- aaaCGg-GGGGGGGaa--UUGGGGg----GGGG- -5' |
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24763 | 3' | -63.5 | NC_005264.1 | + | 38519 | 0.66 | 0.56193 |
Target: 5'- --cGCCCgCCCCaCgggucAGCCgCCgCCCCg -3' miRNA: 3'- aaaCGGGgGGGG-Gaa---UUGGgGG-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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