miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24798 5' -46.2 NC_005282.1 + 58018 0.66 0.998747
Target:  5'- cGGUucAGUUCCAGAagaugacucgUAAGGGGuCUUUACa -3'
miRNA:   3'- -UCAu-UCGGGGUCU----------AUUUCUC-GAAAUG- -5'
24798 5' -46.2 NC_005282.1 + 69337 0.66 0.998747
Target:  5'- --aAAGCCCCAuacuaaGUAcAGGGCUUUAa -3'
miRNA:   3'- ucaUUCGGGGUc-----UAUuUCUCGAAAUg -5'
24798 5' -46.2 NC_005282.1 + 10396 0.66 0.998747
Target:  5'- -uUAAGCCCCAuGUAAAGcaCUUUAUa -3'
miRNA:   3'- ucAUUCGGGGUcUAUUUCucGAAAUG- -5'
24798 5' -46.2 NC_005282.1 + 30637 0.66 0.998747
Target:  5'- aGGaAAGUCCUAGcUGGAGAGUUgggGCu -3'
miRNA:   3'- -UCaUUCGGGGUCuAUUUCUCGAaa-UG- -5'
24798 5' -46.2 NC_005282.1 + 12892 0.66 0.998747
Target:  5'- --aAAGCCCU--AUAAAGAGCUa--- -3'
miRNA:   3'- ucaUUCGGGGucUAUUUCUCGAaaug -5'
24798 5' -46.2 NC_005282.1 + 42240 0.67 0.99529
Target:  5'- uGGUgGAGCaCCCAGAggucAGAGAGUagaugUUGCu -3'
miRNA:   3'- -UCA-UUCG-GGGUCUa---UUUCUCGa----AAUG- -5'
24798 5' -46.2 NC_005282.1 + 32157 0.69 0.988134
Target:  5'- uAGUGAGaggaaaCCCAuAUGAGGGGCUUagACg -3'
miRNA:   3'- -UCAUUCg-----GGGUcUAUUUCUCGAAa-UG- -5'
24798 5' -46.2 NC_005282.1 + 82729 0.73 0.912387
Target:  5'- uAGUA-GCCCCAGAUGcAGGuGCUUc-- -3'
miRNA:   3'- -UCAUuCGGGGUCUAU-UUCuCGAAaug -5'
24798 5' -46.2 NC_005282.1 + 9254 0.79 0.622904
Target:  5'- aAGauAGCCCCAGAUAAAGAGaUUUAUc -3'
miRNA:   3'- -UCauUCGGGGUCUAUUUCUCgAAAUG- -5'
24798 5' -46.2 NC_005282.1 + 10321 1.1 0.010004
Target:  5'- aAGUAAGCCCCAGAUAAAGAGCUUUACc -3'
miRNA:   3'- -UCAUUCGGGGUCUAUUUCUCGAAAUG- -5'
24798 5' -46.2 NC_005282.1 + 8654 1.1 0.010004
Target:  5'- aAGUAAGCCCCAGAUAAAGAGCUUUACc -3'
miRNA:   3'- -UCAUUCGGGGUCUAUUUCUCGAAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.