miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
248 3' -63.5 AC_000008.1 + 8676 0.65 0.258269
Target:  5'- gGUgCUGCGCGCGUagguugcuggcgaACGCGacgacgcGGCGGUUg -3'
miRNA:   3'- -CAgGGCGCGCGCG-------------UGUGCa------CCGCCGG- -5'
248 3' -63.5 AC_000008.1 + 13144 0.66 0.252511
Target:  5'- uGUCagCCGCGCGCuggggcaggaGgACACG-GGCaGCCu -3'
miRNA:   3'- -CAG--GGCGCGCG----------CgUGUGCaCCGcCGG- -5'
248 3' -63.5 AC_000008.1 + 8576 0.66 0.242536
Target:  5'- -gCCCGC-CGCGCGguaccguagucgcgcCGCGgggauGCGGCCu -3'
miRNA:   3'- caGGGCGcGCGCGU---------------GUGCac---CGCCGG- -5'
248 3' -63.5 AC_000008.1 + 8915 0.66 0.22243
Target:  5'- cGUCCgGCuCGCuC-CACgGUGGCGGCg -3'
miRNA:   3'- -CAGGgCGcGCGcGuGUG-CACCGCCGg -5'
248 3' -63.5 AC_000008.1 + 16264 0.66 0.22243
Target:  5'- --gCCGC-CGC-CGCGCGUugGGCGGCa -3'
miRNA:   3'- cagGGCGcGCGcGUGUGCA--CCGCCGg -5'
248 3' -63.5 AC_000008.1 + 8703 0.66 0.22243
Target:  5'- -gCCCGCGCGCgGCGCcgACGUGcccCuGCCc -3'
miRNA:   3'- caGGGCGCGCG-CGUG--UGCACc--GcCGG- -5'
248 3' -63.5 AC_000008.1 + 22676 0.66 0.22243
Target:  5'- -aCUCGCGCGCGCAgG-GcGGaGGCCc -3'
miRNA:   3'- caGGGCGCGCGCGUgUgCaCCgCCGG- -5'
248 3' -63.5 AC_000008.1 + 17269 0.67 0.216792
Target:  5'- aUgCCGCG-GUGCAgGCGgucgcuGCGGCCg -3'
miRNA:   3'- cAgGGCGCgCGCGUgUGCac----CGCCGG- -5'
248 3' -63.5 AC_000008.1 + 9476 0.67 0.215679
Target:  5'- -cCCCGCgGCGacgGCGCAUGgucucggugacgGcGCGGCCg -3'
miRNA:   3'- caGGGCG-CGCg--CGUGUGCa-----------C-CGCCGG- -5'
248 3' -63.5 AC_000008.1 + 6463 0.67 0.205883
Target:  5'- cUCuCCGCGUagGCGCucgUugGUccagcagaGGCGGCCg -3'
miRNA:   3'- cAG-GGCGCG--CGCGu--GugCA--------CCGCCGG- -5'
248 3' -63.5 AC_000008.1 + 17121 0.67 0.205883
Target:  5'- -gUCCGCGUGCGgccaaucaaGCAgGUGGC-GCCg -3'
miRNA:   3'- caGGGCGCGCGCg--------UGUgCACCGcCGG- -5'
248 3' -63.5 AC_000008.1 + 16147 0.67 0.190413
Target:  5'- --gCCGCGUccacuGUGgaCACugGUGGCGGCg -3'
miRNA:   3'- cagGGCGCG-----CGC--GUGugCACCGCCGg -5'
248 3' -63.5 AC_000008.1 + 18610 0.68 0.185487
Target:  5'- cGUCCCuGCGcCGCGCcgccagcgguccGCGauCGUuGCGGCCc -3'
miRNA:   3'- -CAGGG-CGC-GCGCG------------UGU--GCAcCGCCGG- -5'
248 3' -63.5 AC_000008.1 + 6555 0.68 0.180674
Target:  5'- aUUCUGCuCGCGCAa--G-GGCGGCCg -3'
miRNA:   3'- cAGGGCGcGCGCGUgugCaCCGCCGG- -5'
248 3' -63.5 AC_000008.1 + 16973 0.68 0.175973
Target:  5'- -gCCCGCGCuuGCAC-CGUccgaagaaaaGcGCGGCCu -3'
miRNA:   3'- caGGGCGCGcgCGUGuGCA----------C-CGCCGG- -5'
248 3' -63.5 AC_000008.1 + 27944 0.68 0.166895
Target:  5'- aGUCgCGgGCaaaGCACuuGUGGCGGCg -3'
miRNA:   3'- -CAGgGCgCGcg-CGUGugCACCGCCGg -5'
248 3' -63.5 AC_000008.1 + 12739 0.68 0.166895
Target:  5'- cUgCUGCGCGCGCuCACGcUGcGCcacGGCCu -3'
miRNA:   3'- cAgGGCGCGCGCGuGUGC-AC-CG---CCGG- -5'
248 3' -63.5 AC_000008.1 + 24008 0.69 0.138351
Target:  5'- -cCCCGaGCGCGgACGCG-GuGCGGCg -3'
miRNA:   3'- caGGGCgCGCGCgUGUGCaC-CGCCGg -5'
248 3' -63.5 AC_000008.1 + 6415 0.69 0.136124
Target:  5'- uUCCCgaauggcggugcguuGCGCGCGaAUACGUGcagcuaaacaucGCGGCCa -3'
miRNA:   3'- cAGGG---------------CGCGCGCgUGUGCAC------------CGCCGG- -5'
248 3' -63.5 AC_000008.1 + 15980 0.69 0.134659
Target:  5'- --aCCGCGCgcccugggGCGCGCACaaacGCGGCCg -3'
miRNA:   3'- cagGGCGCG--------CGCGUGUGcac-CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.