Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 17675 | 0.67 | 0.859516 |
Target: 5'- gACG-ACGACGggaUCGCGCGAuaugGCg-- -3' miRNA: 3'- gUGCuUGCUGCag-AGCGCGCU----UGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 25658 | 0.67 | 0.851022 |
Target: 5'- aACGGgaagGCGGCGcagccgUUCGCGCGAGCc-- -3' miRNA: 3'- gUGCU----UGCUGCa-----GAGCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 37189 | 0.67 | 0.842291 |
Target: 5'- gACGAGCGcgaccguguaacGCGUCUUGCGUucGCUg- -3' miRNA: 3'- gUGCUUGC------------UGCAGAGCGCGcuUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 46790 | 0.68 | 0.824157 |
Target: 5'- gCAUGuGCG-CGUCgucacucgcgCGCGCGAACUUc -3' miRNA: 3'- -GUGCuUGCuGCAGa---------GCGCGCUUGAAc -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 33158 | 0.68 | 0.824157 |
Target: 5'- gCACGcugcuCGGCGUCgagcgcggCGCGCGAGauCUUGc -3' miRNA: 3'- -GUGCuu---GCUGCAGa-------GCGCGCUU--GAAC- -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 51475 | 0.68 | 0.814773 |
Target: 5'- aGCGAugGGCGgugaUCGCGCGc-UUUGg -3' miRNA: 3'- gUGCUugCUGCag--AGCGCGCuuGAAC- -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 33112 | 0.68 | 0.805191 |
Target: 5'- aGCGGGCGAUGcugcCUCuGCGUGAACg-- -3' miRNA: 3'- gUGCUUGCUGCa---GAG-CGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 48516 | 0.69 | 0.785478 |
Target: 5'- gGCGGGCGugGgaauaCGCGCGAAUa-- -3' miRNA: 3'- gUGCUUGCugCaga--GCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 43618 | 0.69 | 0.785478 |
Target: 5'- cCGCGcGCGGCGgccgCg-GCGCGAGCUg- -3' miRNA: 3'- -GUGCuUGCUGCa---GagCGCGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 14566 | 0.69 | 0.77537 |
Target: 5'- uGCGGACGugGUCUggcCGCgGCGAGg--- -3' miRNA: 3'- gUGCUUGCugCAGA---GCG-CGCUUgaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 40157 | 0.69 | 0.765109 |
Target: 5'- aAUucACGGCGUCgagguagCGCGCGAGCg-- -3' miRNA: 3'- gUGcuUGCUGCAGa------GCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 54679 | 0.69 | 0.765109 |
Target: 5'- gGCGAA-GACGg--CGCGCGAGCg-- -3' miRNA: 3'- gUGCUUgCUGCagaGCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 15719 | 0.7 | 0.733529 |
Target: 5'- gCACGGGCGucUGUCgacgCGCGCGGugUg- -3' miRNA: 3'- -GUGCUUGCu-GCAGa---GCGCGCUugAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 28640 | 0.7 | 0.733529 |
Target: 5'- aGgGAGuucCGACGUCagCGCGCGAACa-- -3' miRNA: 3'- gUgCUU---GCUGCAGa-GCGCGCUUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 22869 | 0.7 | 0.690011 |
Target: 5'- gCGgGAAgGGCGUCgagCGcCGCGAGCUg- -3' miRNA: 3'- -GUgCUUgCUGCAGa--GC-GCGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 10137 | 0.7 | 0.678959 |
Target: 5'- gGCGcaGACGGCG-CUCGCGCGuACg-- -3' miRNA: 3'- gUGC--UUGCUGCaGAGCGCGCuUGaac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 11633 | 0.73 | 0.549059 |
Target: 5'- gCGCGAacucgggGCGAUGUCgaugggugacaacgCGCGCGAGCUg- -3' miRNA: 3'- -GUGCU-------UGCUGCAGa-------------GCGCGCUUGAac -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 27964 | 0.74 | 0.507109 |
Target: 5'- gGCucACGACGUCgaaugcugaagccgcUCGCGCGAugUUGc -3' miRNA: 3'- gUGcuUGCUGCAG---------------AGCGCGCUugAAC- -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 16218 | 0.74 | 0.471686 |
Target: 5'- -cCGAACGGcCGUCUCGCuCGGGCUUu -3' miRNA: 3'- guGCUUGCU-GCAGAGCGcGCUUGAAc -5' |
|||||||
24806 | 5' | -51.7 | NC_005284.1 | + | 44887 | 0.75 | 0.451443 |
Target: 5'- gCGCGAGCGACGcuUCggCGCGCuGAGCUc- -3' miRNA: 3'- -GUGCUUGCUGC--AGa-GCGCG-CUUGAac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home