miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24808 3' -50.3 NC_005284.1 + 22706 0.66 0.942184
Target:  5'- gGGUACggCGUCG-CAuucccuuucacGGAGUACGAg -3'
miRNA:   3'- aCCAUGa-GUAGCuGUua---------CCUCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 45851 0.66 0.937997
Target:  5'- cGGg---CAUCGAacCGuuugcuacGUGGAGCGCGAa -3'
miRNA:   3'- aCCaugaGUAGCU--GU--------UACCUCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 1619 0.66 0.937997
Target:  5'- uUGcGUGCUCGcgcUCGAC-AUGGcGCGCa- -3'
miRNA:   3'- -AC-CAUGAGU---AGCUGuUACCuCGUGcu -5'
24808 3' -50.3 NC_005284.1 + 16171 0.66 0.926701
Target:  5'- aUGGgGCUCGgcgCGuCGAUGGcGCugGGc -3'
miRNA:   3'- -ACCaUGAGUa--GCuGUUACCuCGugCU- -5'
24808 3' -50.3 NC_005284.1 + 20465 0.67 0.900548
Target:  5'- gGGUGCUCccaGUCcuCAAUGGcAGCAgCGAu -3'
miRNA:   3'- aCCAUGAG---UAGcuGUUACC-UCGU-GCU- -5'
24808 3' -50.3 NC_005284.1 + 25689 0.67 0.893279
Target:  5'- aUGGUGC--GUCGACAAggGGaAGCGgGAu -3'
miRNA:   3'- -ACCAUGagUAGCUGUUa-CC-UCGUgCU- -5'
24808 3' -50.3 NC_005284.1 + 29314 0.67 0.885725
Target:  5'- -cGUACUgAUCGAuCAGUGGAcGCAUa- -3'
miRNA:   3'- acCAUGAgUAGCU-GUUACCU-CGUGcu -5'
24808 3' -50.3 NC_005284.1 + 49297 0.69 0.782903
Target:  5'- cGGccGCUCGUCGuucccgaggguacgGCGAUGGuuGGCACGGc -3'
miRNA:   3'- aCCa-UGAGUAGC--------------UGUUACC--UCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 16055 0.71 0.688369
Target:  5'- cGGUAaUCGUCGGCAGUa-AGCGCGGg -3'
miRNA:   3'- aCCAUgAGUAGCUGUUAccUCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 16501 0.72 0.654328
Target:  5'- aGGUGCUCGacgugaucUCGGCGgggcccaucGUGGGGCugGu -3'
miRNA:   3'- aCCAUGAGU--------AGCUGU---------UACCUCGugCu -5'
24808 3' -50.3 NC_005284.1 + 6540 0.73 0.574634
Target:  5'- aGGcGCUCAggcgcgCGACAGUGGcuGGUGCGAa -3'
miRNA:   3'- aCCaUGAGUa-----GCUGUUACC--UCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 51292 0.74 0.552175
Target:  5'- cGGcGCUUAUUcgGGCAAUGGAGCuCGAg -3'
miRNA:   3'- aCCaUGAGUAG--CUGUUACCUCGuGCU- -5'
24808 3' -50.3 NC_005284.1 + 12370 0.78 0.333568
Target:  5'- gGGUggGCUCGUUGGCg--GGAGCGCGGg -3'
miRNA:   3'- aCCA--UGAGUAGCUGuuaCCUCGUGCU- -5'
24808 3' -50.3 NC_005284.1 + 53634 1.1 0.002824
Target:  5'- gUGGUACUCAUCGACAAUGGAGCACGAu -3'
miRNA:   3'- -ACCAUGAGUAGCUGUUACCUCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.