Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24808 | 5' | -58.2 | NC_005284.1 | + | 31010 | 0.76 | 0.14933 |
Target: 5'- cCGCCGUgCGUgCGGaaGUUGCCGGUUGGCu -3' miRNA: 3'- -GCGGCA-GCGgGCC--CAACGGUUAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 15343 | 0.66 | 0.585676 |
Target: 5'- uCG-UGUCGCUCGGcGUgcagGCCGAuggcucgaUCGGCa -3' miRNA: 3'- -GCgGCAGCGGGCC-CAa---CGGUU--------AGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 25578 | 0.66 | 0.575026 |
Target: 5'- cCGCCGUcCGCgCGgcGGUUGCCGA-CuGUu -3' miRNA: 3'- -GCGGCA-GCGgGC--CCAACGGUUaGuCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 20829 | 0.67 | 0.522589 |
Target: 5'- gCGUCGUCGCUUacGUUGaCCGAuaUCGGCg -3' miRNA: 3'- -GCGGCAGCGGGccCAAC-GGUU--AGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 8956 | 0.67 | 0.512312 |
Target: 5'- aCG-CGUCGCaucuCGGGUUGUCuaucaacaGGUCGGCc -3' miRNA: 3'- -GCgGCAGCGg---GCCCAACGG--------UUAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 17856 | 0.67 | 0.509245 |
Target: 5'- uCGCCGUUGCcgacccaaagaaggCCGGcc-GCCGgAUCGGCg -3' miRNA: 3'- -GCGGCAGCG--------------GGCCcaaCGGU-UAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 6780 | 0.67 | 0.502119 |
Target: 5'- aGCCGUucaugCGgCCGGcGUUugaugcGUCGAUCGGCg -3' miRNA: 3'- gCGGCA-----GCgGGCC-CAA------CGGUUAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 12354 | 0.67 | 0.492017 |
Target: 5'- uCGCgCGauUCGCCgCGGGUggGCUcGUUGGCg -3' miRNA: 3'- -GCG-GC--AGCGG-GCCCAa-CGGuUAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 33366 | 0.67 | 0.482008 |
Target: 5'- cCGCCcguucGUCGgCCGGcGcUGCCGA-CGGCu -3' miRNA: 3'- -GCGG-----CAGCgGGCC-CaACGGUUaGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 25195 | 0.67 | 0.482008 |
Target: 5'- uGCCGguUCGCCCGaaaaGGUUGCgAcuAUgGGCc -3' miRNA: 3'- gCGGC--AGCGGGC----CCAACGgU--UAgUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 14246 | 0.74 | 0.199413 |
Target: 5'- uGCUGUUGgCCGGGUUGCUugagacgGAUgCGGCg -3' miRNA: 3'- gCGGCAGCgGGCCCAACGG-------UUA-GUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 44894 | 0.73 | 0.239442 |
Target: 5'- aCGCCGUCGCucacaacauCCGGGcgggUGCgAAUCAcucGCa -3' miRNA: 3'- -GCGGCAGCG---------GGCCCa---ACGgUUAGU---CG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 10498 | 0.71 | 0.285264 |
Target: 5'- gCGCCGUCGgugguCUCGGa-UGCCGAUCAGg -3' miRNA: 3'- -GCGGCAGC-----GGGCCcaACGGUUAGUCg -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 33476 | 0.71 | 0.306927 |
Target: 5'- gCGCCGUCGgCCGGcGcugcUGCCGAcaUAGCg -3' miRNA: 3'- -GCGGCAGCgGGCC-Ca---ACGGUUa-GUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 53563 | 0.69 | 0.370732 |
Target: 5'- uCGCCGUCGUCCGcacuGGggGCguG-CGGCu -3' miRNA: 3'- -GCGGCAGCGGGC----CCaaCGguUaGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 32797 | 0.69 | 0.379318 |
Target: 5'- gCGUCGgccUGCgCGGGUUGCgGggCGGCg -3' miRNA: 3'- -GCGGCa--GCGgGCCCAACGgUuaGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 5236 | 0.69 | 0.405863 |
Target: 5'- aCGCCG-CGCCUGuGGaaucUGCCGGUCguugaaacgcaGGCg -3' miRNA: 3'- -GCGGCaGCGGGC-CCa---ACGGUUAG-----------UCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 53668 | 1.12 | 0.000339 |
Target: 5'- gCGCCGUCGCCCGGGUUGCCAAUCAGCg -3' miRNA: 3'- -GCGGCAGCGGGCCCAACGGUUAGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 46347 | 0.67 | 0.522589 |
Target: 5'- cCGCCGUCGC--GGGcucGCCGGaccaucUCGGCa -3' miRNA: 3'- -GCGGCAGCGggCCCaa-CGGUU------AGUCG- -5' |
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24808 | 5' | -58.2 | NC_005284.1 | + | 47779 | 0.67 | 0.512312 |
Target: 5'- cCGCCaGUCaGCCCGGcGagcGCCAuGUCgAGCg -3' miRNA: 3'- -GCGG-CAG-CGGGCC-Caa-CGGU-UAG-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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