miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24808 5' -58.2 NC_005284.1 + 53563 0.69 0.370732
Target:  5'- uCGCCGUCGUCCGcacuGGggGCguG-CGGCu -3'
miRNA:   3'- -GCGGCAGCGGGC----CCaaCGguUaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 21194 0.7 0.35977
Target:  5'- gCGCCGauugcggaucggcuUCGCUggUGGG-UGCCGaaGUCAGCg -3'
miRNA:   3'- -GCGGC--------------AGCGG--GCCCaACGGU--UAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 54713 0.7 0.353962
Target:  5'- uGCCGUCgGCuuGGGUuuucUGCCc--CGGCc -3'
miRNA:   3'- gCGGCAG-CGggCCCA----ACGGuuaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 44671 0.71 0.314423
Target:  5'- gCGCCGUCGCCgCGcuuucGGUcGCCGucuUCAGa -3'
miRNA:   3'- -GCGGCAGCGG-GC-----CCAaCGGUu--AGUCg -5'
24808 5' -58.2 NC_005284.1 + 33476 0.71 0.306927
Target:  5'- gCGCCGUCGgCCGGcGcugcUGCCGAcaUAGCg -3'
miRNA:   3'- -GCGGCAGCgGGCC-Ca---ACGGUUa-GUCG- -5'
24808 5' -58.2 NC_005284.1 + 35839 0.71 0.299569
Target:  5'- uCGCCGgccaUCGgCgGGGUgauuagGUCGAUCGGCg -3'
miRNA:   3'- -GCGGC----AGCgGgCCCAa-----CGGUUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 42127 0.71 0.285264
Target:  5'- aGCCGUCGCCgaacUGGGcuUUGCgcaCAcgCAGCg -3'
miRNA:   3'- gCGGCAGCGG----GCCC--AACG---GUuaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 10498 0.71 0.285264
Target:  5'- gCGCCGUCGgugguCUCGGa-UGCCGAUCAGg -3'
miRNA:   3'- -GCGGCAGC-----GGGCCcaACGGUUAGUCg -5'
24808 5' -58.2 NC_005284.1 + 32984 0.73 0.239442
Target:  5'- aCGCCGUCGCCaccGGcUGCCGugCAGUg -3'
miRNA:   3'- -GCGGCAGCGGgc-CCaACGGUuaGUCG- -5'
24808 5' -58.2 NC_005284.1 + 44894 0.73 0.239442
Target:  5'- aCGCCGUCGCucacaacauCCGGGcgggUGCgAAUCAcucGCa -3'
miRNA:   3'- -GCGGCAGCG---------GGCCCa---ACGgUUAGU---CG- -5'
24808 5' -58.2 NC_005284.1 + 53575 0.73 0.233422
Target:  5'- uGCCGgcgcgCGCCCa---UGCCGGUCAGCa -3'
miRNA:   3'- gCGGCa----GCGGGcccaACGGUUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 14246 0.74 0.199413
Target:  5'- uGCUGUUGgCCGGGUUGCUugagacgGAUgCGGCg -3'
miRNA:   3'- gCGGCAGCgGGCCCAACGG-------UUA-GUCG- -5'
24808 5' -58.2 NC_005284.1 + 31010 0.76 0.14933
Target:  5'- cCGCCGUgCGUgCGGaaGUUGCCGGUUGGCu -3'
miRNA:   3'- -GCGGCA-GCGgGCC--CAACGGUUAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 10512 0.77 0.113424
Target:  5'- gCGCCGUCGUaguggauCUGGG-UGCCGccAUCAGCg -3'
miRNA:   3'- -GCGGCAGCG-------GGCCCaACGGU--UAGUCG- -5'
24808 5' -58.2 NC_005284.1 + 53668 1.12 0.000339
Target:  5'- gCGCCGUCGCCCGGGUUGCCAAUCAGCg -3'
miRNA:   3'- -GCGGCAGCGGGCCCAACGGUUAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.