miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24810 3' -56.6 NC_005284.1 + 44099 0.69 0.430825
Target:  5'- cGAAGCGA-GGC---CCGCCGUGUcgaucGCGc -3'
miRNA:   3'- -CUUCGCUaCCGuuaGGCGGCACG-----CGC- -5'
24810 3' -56.6 NC_005284.1 + 14582 0.7 0.38463
Target:  5'- --uGCGcuUGGCGAUCuCGUCG-GCGCGa -3'
miRNA:   3'- cuuCGCu-ACCGUUAG-GCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 13308 0.7 0.375793
Target:  5'- uGAAGaacUGGCAcgUCGCCGaGCGCGg -3'
miRNA:   3'- -CUUCgcuACCGUuaGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 20406 0.71 0.367093
Target:  5'- cGAAGUGAUGaCca--CGCCGUGUGCGg -3'
miRNA:   3'- -CUUCGCUACcGuuagGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 30986 0.71 0.367093
Target:  5'- -cGGCGuaguucgaacUGGCGcuugCCGCCGUGCGUGc -3'
miRNA:   3'- cuUCGCu---------ACCGUua--GGCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 12386 0.71 0.350114
Target:  5'- gGGAGCGcgGGaggagggGAUUCGCCG-GCGCGc -3'
miRNA:   3'- -CUUCGCuaCCg------UUAGGCGGCaCGCGC- -5'
24810 3' -56.6 NC_005284.1 + 46118 0.71 0.325709
Target:  5'- -cGGCGuucgaGGCAaacgccgcAUCCGCUGUGCGCc -3'
miRNA:   3'- cuUCGCua---CCGU--------UAGGCGGCACGCGc -5'
24810 3' -56.6 NC_005284.1 + 37789 0.72 0.280755
Target:  5'- --cGCGucGGCGAUCguCGCCGUGUGCGc -3'
miRNA:   3'- cuuCGCuaCCGUUAG--GCGGCACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 21402 0.74 0.234701
Target:  5'- cGGGUGAUGGCGAgCCGUCGgcaGCGCc -3'
miRNA:   3'- cUUCGCUACCGUUaGGCGGCa--CGCGc -5'
24810 3' -56.6 NC_005284.1 + 21742 0.81 0.075776
Target:  5'- -cGGCGAUGGUGugugCCGCCaGUGCGCGg -3'
miRNA:   3'- cuUCGCUACCGUua--GGCGG-CACGCGC- -5'
24810 3' -56.6 NC_005284.1 + 50746 1.09 0.000731
Target:  5'- gGAAGCGAUGGCAAUCCGCCGUGCGCGa -3'
miRNA:   3'- -CUUCGCUACCGUUAGGCGGCACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.