miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24811 5' -59.1 NC_005284.1 + 22886 0.66 0.571412
Target:  5'- aCgCGC-UGACGGUCgGCGAaugucaggUGAUCAg -3'
miRNA:   3'- gGgGCGaACUGCCAGgCGCU--------GCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 47897 0.66 0.540373
Target:  5'- aCCgCGCUUGcGCGaGcaguucCCGcCGACGGCCAa -3'
miRNA:   3'- -GGgGCGAAC-UGC-Ca-----GGC-GCUGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 34350 0.66 0.530149
Target:  5'- aCCUCGauucaaGACGGUuuGCGGaucuCGACCGc -3'
miRNA:   3'- -GGGGCgaa---CUGCCAggCGCU----GCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 43616 0.67 0.519997
Target:  5'- uUCCGCgcgcGGCGG-CCGCGGCGcgaGCUg -3'
miRNA:   3'- gGGGCGaa--CUGCCaGGCGCUGC---UGGu -5'
24811 5' -59.1 NC_005284.1 + 15604 0.67 0.509921
Target:  5'- -gCCGCgacgUGACguugcaGGUCgGCGACGugCu -3'
miRNA:   3'- ggGGCGa---ACUG------CCAGgCGCUGCugGu -5'
24811 5' -59.1 NC_005284.1 + 8064 0.67 0.499929
Target:  5'- --aCGCcgGAUGGUUgGCGGCGGCUAu -3'
miRNA:   3'- gggGCGaaCUGCCAGgCGCUGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 10185 0.67 0.499929
Target:  5'- uUCCgGCUUGcuggcgGCGGUCgGCGGCuuACCGg -3'
miRNA:   3'- -GGGgCGAAC------UGCCAGgCGCUGc-UGGU- -5'
24811 5' -59.1 NC_005284.1 + 21221 0.67 0.491011
Target:  5'- gCCCgGCUUGAgGGggcgcacauaucagcUCGCGGCGGCg- -3'
miRNA:   3'- -GGGgCGAACUgCCa--------------GGCGCUGCUGgu -5'
24811 5' -59.1 NC_005284.1 + 21300 0.67 0.490025
Target:  5'- uCCCCGCUaUGuCGG-CagcaGCGcCGGCCGa -3'
miRNA:   3'- -GGGGCGA-ACuGCCaGg---CGCuGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 51065 0.67 0.479236
Target:  5'- gUCCGCUcGAgGGUgucgagcUCGaCGACGGCCAa -3'
miRNA:   3'- gGGGCGAaCUgCCA-------GGC-GCUGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 50477 0.68 0.460882
Target:  5'- uUCCCGgUUGcgucGCGuGUCaCGCGugGAUCGa -3'
miRNA:   3'- -GGGGCgAAC----UGC-CAG-GCGCugCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 962 0.68 0.441972
Target:  5'- aCCCCguucgaGCUUGGCGcaaucaUCUGCGcAUGACCAa -3'
miRNA:   3'- -GGGG------CGAACUGCc-----AGGCGC-UGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 43352 0.69 0.3967
Target:  5'- uCCCCGCcccgacaGGCGGUuuUCGCGAuCGACgCAg -3'
miRNA:   3'- -GGGGCGaa-----CUGCCA--GGCGCU-GCUG-GU- -5'
24811 5' -59.1 NC_005284.1 + 44773 0.69 0.388009
Target:  5'- gCUCgGCUUGcgcaaggccGCGGUCCGUcuCGGCCAg -3'
miRNA:   3'- -GGGgCGAAC---------UGCCAGGCGcuGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 29624 0.69 0.371008
Target:  5'- gCUCCGUUUG-CGG-CUGUGACGACg- -3'
miRNA:   3'- -GGGGCGAACuGCCaGGCGCUGCUGgu -5'
24811 5' -59.1 NC_005284.1 + 23250 0.7 0.357778
Target:  5'- aCCCGUggGAagguugccagaagguCGGUCCGgGauGCGACCAc -3'
miRNA:   3'- gGGGCGaaCU---------------GCCAGGCgC--UGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 21671 0.7 0.354523
Target:  5'- gCCgCCGCgucGGCGGUggCCGCcGuCGACCAa -3'
miRNA:   3'- -GG-GGCGaa-CUGCCA--GGCG-CuGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 8596 0.7 0.338561
Target:  5'- aCCgCCGCaUGcGCGGUCucuCGuCGACGGCCGg -3'
miRNA:   3'- -GG-GGCGaAC-UGCCAG---GC-GCUGCUGGU- -5'
24811 5' -59.1 NC_005284.1 + 18629 0.71 0.286865
Target:  5'- uUCCGggUGACGGaUCCGCuGGCGACa- -3'
miRNA:   3'- gGGGCgaACUGCC-AGGCG-CUGCUGgu -5'
24811 5' -59.1 NC_005284.1 + 50118 1.1 0.000485
Target:  5'- uCCCCGCUUGACGGUCCGCGACGACCAg -3'
miRNA:   3'- -GGGGCGAACUGCCAGGCGCUGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.