miRNA display CGI


Results 21 - 40 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24813 5' -53.1 NC_005284.1 + 11840 0.69 0.723462
Target:  5'- uCUCGAG-CAGCGg-CUCGCGuugcAGGCc -3'
miRNA:   3'- -GGGCUCuGUUGCagGAGCGCuu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 18728 0.68 0.734026
Target:  5'- aUCCGcAGGCGucgACGUCguaucaggggCUCGCGGucGGGCa -3'
miRNA:   3'- -GGGC-UCUGU---UGCAG----------GAGCGCUu-UCCG- -5'
24813 5' -53.1 NC_005284.1 + 26280 0.68 0.765061
Target:  5'- aCCGAccuACGuCGUCCUCGau-AAGGCa -3'
miRNA:   3'- gGGCUc--UGUuGCAGGAGCgcuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 42728 0.68 0.744488
Target:  5'- aCCUGAGACAucgccgcacGCG-CCgaaaaccgCGCGAGGucGGCg -3'
miRNA:   3'- -GGGCUCUGU---------UGCaGGa-------GCGCUUU--CCG- -5'
24813 5' -53.1 NC_005284.1 + 48956 0.68 0.744488
Target:  5'- aUCGucGGCAaccccuGCGUCCUCGCGc-AGGUg -3'
miRNA:   3'- gGGCu-CUGU------UGCAGGAGCGCuuUCCG- -5'
24813 5' -53.1 NC_005284.1 + 39117 0.69 0.712808
Target:  5'- aCCGAGAUAcACGcCCgCGUGAuucGGCa -3'
miRNA:   3'- gGGCUCUGU-UGCaGGaGCGCUuu-CCG- -5'
24813 5' -53.1 NC_005284.1 + 44228 0.69 0.712808
Target:  5'- gCCGAGGuuCGACGUCUUgagGCGAuccAGGCc -3'
miRNA:   3'- gGGCUCU--GUUGCAGGAg--CGCUu--UCCG- -5'
24813 5' -53.1 NC_005284.1 + 3198 0.69 0.680416
Target:  5'- gCCGGGgaACGACGgcUCCagccaaCGCGAAAGGUu -3'
miRNA:   3'- gGGCUC--UGUUGC--AGGa-----GCGCUUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 41954 0.71 0.603718
Target:  5'- uUCGcAGACGAagaGUCCgcgggCGCGAAGcGGCg -3'
miRNA:   3'- gGGC-UCUGUUg--CAGGa----GCGCUUU-CCG- -5'
24813 5' -53.1 NC_005284.1 + 17335 0.74 0.44652
Target:  5'- cCUCGcgccGACGAUGuUCCUCGCGGccGGCu -3'
miRNA:   3'- -GGGCu---CUGUUGC-AGGAGCGCUuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 19121 0.68 0.754836
Target:  5'- -aUGAGACGACa-CCgcgCGCGAAcGGCa -3'
miRNA:   3'- ggGCUCUGUUGcaGGa--GCGCUUuCCG- -5'
24813 5' -53.1 NC_005284.1 + 2720 0.68 0.765061
Target:  5'- gCCCGAuGACgAGCGcUCCcccuccgugaUUGCGcAAGGCa -3'
miRNA:   3'- -GGGCU-CUG-UUGC-AGG----------AGCGCuUUCCG- -5'
24813 5' -53.1 NC_005284.1 + 48512 0.67 0.78509
Target:  5'- uCCCGAGACGACGuacUCCUUcccacucaaaaaGCGAAc--- -3'
miRNA:   3'- -GGGCUCUGUUGC---AGGAG------------CGCUUuccg -5'
24813 5' -53.1 NC_005284.1 + 39213 0.67 0.794872
Target:  5'- gUCGAGAaagcCAGCGUCCUgauaGUGGuuGAGGUa -3'
miRNA:   3'- gGGCUCU----GUUGCAGGAg---CGCU--UUCCG- -5'
24813 5' -53.1 NC_005284.1 + 54287 0.67 0.832208
Target:  5'- gCCGAG-CAGC---UUCGCGAAAGGg -3'
miRNA:   3'- gGGCUCuGUUGcagGAGCGCUUUCCg -5'
24813 5' -53.1 NC_005284.1 + 36092 0.66 0.841042
Target:  5'- gUCgGAGAacuuggucGCGUCgUCGCGAuucGGCg -3'
miRNA:   3'- -GGgCUCUgu------UGCAGgAGCGCUuu-CCG- -5'
24813 5' -53.1 NC_005284.1 + 17376 0.66 0.849658
Target:  5'- uCCCGGccGGCuACGUCggUGUGAAGGuGCa -3'
miRNA:   3'- -GGGCU--CUGuUGCAGgaGCGCUUUC-CG- -5'
24813 5' -53.1 NC_005284.1 + 25074 0.66 0.849658
Target:  5'- gCCUGAuGACGcCGgccgaCCUCGCGAucgucaccGGCa -3'
miRNA:   3'- -GGGCU-CUGUuGCa----GGAGCGCUuu------CCG- -5'
24813 5' -53.1 NC_005284.1 + 50941 0.66 0.858047
Target:  5'- uUCCGcGAUAcGCGaUCCUUGCGuucGGCg -3'
miRNA:   3'- -GGGCuCUGU-UGC-AGGAGCGCuuuCCG- -5'
24813 5' -53.1 NC_005284.1 + 21256 0.66 0.866201
Target:  5'- gCUCGaAGAUGA--UCUUCGCGAAGcGGCa -3'
miRNA:   3'- -GGGC-UCUGUUgcAGGAGCGCUUU-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.