miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24814 3' -52.3 NC_005284.1 + 24418 0.66 0.867266
Target:  5'- cGGGcCGAGCGcaUCGCCCuCGCGCUc- -3'
miRNA:   3'- uUUC-GCUUGCa-AGCGGGuGUGUGAcc -5'
24814 3' -52.3 NC_005284.1 + 49322 0.66 0.850329
Target:  5'- -cGGCGAugGUUgGCaCgGCACGCg-- -3'
miRNA:   3'- uuUCGCUugCAAgCG-GgUGUGUGacc -5'
24814 3' -52.3 NC_005284.1 + 10585 0.67 0.803954
Target:  5'- gGAAGCGcGCGUUgaCGCUCuggACGCACcGGa -3'
miRNA:   3'- -UUUCGCuUGCAA--GCGGG---UGUGUGaCC- -5'
24814 3' -52.3 NC_005284.1 + 21259 0.67 0.794069
Target:  5'- -cGGUGAGC-UUCGCCUACAaCAUcGGg -3'
miRNA:   3'- uuUCGCUUGcAAGCGGGUGU-GUGaCC- -5'
24814 3' -52.3 NC_005284.1 + 30374 0.69 0.709611
Target:  5'- gAGGGCGAuGCGcUCgGCCCGCGugUGCUGGu -3'
miRNA:   3'- -UUUCGCU-UGCaAG-CGGGUGU--GUGACC- -5'
24814 3' -52.3 NC_005284.1 + 37006 0.69 0.706305
Target:  5'- --cGCGG-CGUUCGCCUuuaccucguccucgACGCGCUGc -3'
miRNA:   3'- uuuCGCUuGCAAGCGGG--------------UGUGUGACc -5'
24814 3' -52.3 NC_005284.1 + 33805 0.71 0.552928
Target:  5'- --cGCGccguuCGUaaUCGCCCGCACGCaGGa -3'
miRNA:   3'- uuuCGCuu---GCA--AGCGGGUGUGUGaCC- -5'
24814 3' -52.3 NC_005284.1 + 32936 0.71 0.551825
Target:  5'- uAGGCG-GCGgcaccaUCGCCCACgccggcgGCGCUGGa -3'
miRNA:   3'- uUUCGCuUGCa-----AGCGGGUG-------UGUGACC- -5'
24814 3' -52.3 NC_005284.1 + 31338 0.72 0.541929
Target:  5'- -cGGCGAGCGacgCGCagaaCACGCGCUGu -3'
miRNA:   3'- uuUCGCUUGCaa-GCGg---GUGUGUGACc -5'
24814 3' -52.3 NC_005284.1 + 6253 0.73 0.467381
Target:  5'- uGGGCGAACGUUCGCUUuUugAgUGGg -3'
miRNA:   3'- uUUCGCUUGCAAGCGGGuGugUgACC- -5'
24814 3' -52.3 NC_005284.1 + 23353 0.73 0.467381
Target:  5'- gAAAGCGGcgGCGUUgGCCCuACGCACg-- -3'
miRNA:   3'- -UUUCGCU--UGCAAgCGGG-UGUGUGacc -5'
24814 3' -52.3 NC_005284.1 + 23366 0.73 0.43707
Target:  5'- -cGGCGcACG-UCGCCCGCGaACUGGc -3'
miRNA:   3'- uuUCGCuUGCaAGCGGGUGUgUGACC- -5'
24814 3' -52.3 NC_005284.1 + 45561 0.76 0.320048
Target:  5'- --cGCGuGGCGcgUCGCCCGCGCACUcGGc -3'
miRNA:   3'- uuuCGC-UUGCa-AGCGGGUGUGUGA-CC- -5'
24814 3' -52.3 NC_005284.1 + 48541 1.08 0.002375
Target:  5'- aAAAGCGAACGUUCGCCCACACACUGGc -3'
miRNA:   3'- -UUUCGCUUGCAAGCGGGUGUGUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.