Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24814 | 5' | -55.8 | NC_005284.1 | + | 38743 | 0.68 | 0.554206 |
Target: 5'- uGCCgaCGAUUACCGGcGCAauGCGGaucUCGUCg -3' miRNA: 3'- -UGG--GUUAGUGGCC-CGU--UGCCa--AGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 31419 | 0.68 | 0.554206 |
Target: 5'- uGCgCCAGUUcgCGGGCGACGug-CGCCg -3' miRNA: 3'- -UG-GGUUAGugGCCCGUUGCcaaGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 52987 | 0.68 | 0.543548 |
Target: 5'- uGCCgaggCAAUCGCggUGGGCAuCGcGUUUGCCg -3' miRNA: 3'- -UGG----GUUAGUG--GCCCGUuGC-CAAGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 21775 | 0.69 | 0.512007 |
Target: 5'- gGCaaagcAUCACCGGGCAGCaGcaUCGCCc -3' miRNA: 3'- -UGggu--UAGUGGCCCGUUGcCa-AGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 49845 | 0.69 | 0.501659 |
Target: 5'- aGCCCG--UACCGGGC-ACGGc-CGUCg -3' miRNA: 3'- -UGGGUuaGUGGCCCGuUGCCaaGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 21838 | 0.69 | 0.501659 |
Target: 5'- uUCCAG-CGCCgccggcguGGGCGAUGGUgcCGCCg -3' miRNA: 3'- uGGGUUaGUGG--------CCCGUUGCCAa-GCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 47452 | 0.69 | 0.491404 |
Target: 5'- -gCCGAUCaACCGGGCcgagaaGAUGGcUCGCa -3' miRNA: 3'- ugGGUUAG-UGGCCCG------UUGCCaAGCGg -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 32952 | 0.7 | 0.480238 |
Target: 5'- cGCCCAcgccggcggcgcuGgaagCGCCGGGC-ACGccgUCGCCa -3' miRNA: 3'- -UGGGU-------------Ua---GUGGCCCGuUGCca-AGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 30905 | 0.7 | 0.440731 |
Target: 5'- aGCCCAGUCgggaugcAUCGGGCGggcgccgugGCGcuUUCGCCg -3' miRNA: 3'- -UGGGUUAG-------UGGCCCGU---------UGCc-AAGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 46025 | 0.71 | 0.419804 |
Target: 5'- gACCUAucuGUCGCCGGGCGucgagcaggccucgACGGcaagCGCUc -3' miRNA: 3'- -UGGGU---UAGUGGCCCGU--------------UGCCaa--GCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 2123 | 0.71 | 0.416997 |
Target: 5'- cGCCCGAUCAagcaGGGCAacgacaacaagauugACGGUgcugUCGCa -3' miRNA: 3'- -UGGGUUAGUgg--CCCGU---------------UGCCA----AGCGg -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 35970 | 0.71 | 0.394961 |
Target: 5'- gGCCCcuUCGCCGGGaaccACGGcccgacgUUGCCg -3' miRNA: 3'- -UGGGuuAGUGGCCCgu--UGCCa------AGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 41524 | 0.72 | 0.377183 |
Target: 5'- cACCCAGUCGCCGGcauucaGCAcguucaguugagACaGG-UCGCCg -3' miRNA: 3'- -UGGGUUAGUGGCC------CGU------------UG-CCaAGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 54362 | 0.72 | 0.376308 |
Target: 5'- cGCCCGAUgaagccgugcaagCACCgGGGguGCGGUgCGCUc -3' miRNA: 3'- -UGGGUUA-------------GUGG-CCCguUGCCAaGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 1117 | 0.72 | 0.368498 |
Target: 5'- cGCUgAuuggCAacCCGGGCGACGGcgcgUCGCCa -3' miRNA: 3'- -UGGgUua--GU--GGCCCGUUGCCa---AGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 33367 | 0.73 | 0.304064 |
Target: 5'- cGCCCGuucGUCgGCCGGcGCugccGACGGcUCGCCa -3' miRNA: 3'- -UGGGU---UAG-UGGCC-CG----UUGCCaAGCGG- -5' |
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24814 | 5' | -55.8 | NC_005284.1 | + | 48575 | 1.12 | 0.000578 |
Target: 5'- cACCCAAUCACCGGGCAACGGUUCGCCg -3' miRNA: 3'- -UGGGUUAGUGGCCCGUUGCCAAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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