Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 40530 | 0.68 | 0.374823 |
Target: 5'- -aACGCCGcauCCGUC-UCAagcAACCCGGCc -3' miRNA: 3'- caUGCGGCc--GGCAGcGGU---UUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 27243 | 0.68 | 0.392035 |
Target: 5'- -aGCGCacgCGGCCaauaGCCGAACCCcGCg -3' miRNA: 3'- caUGCG---GCCGGcag-CGGUUUGGGcCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 18477 | 0.68 | 0.392035 |
Target: 5'- -cGCGCgGGUgCG-CGCCGAgaacgcGCUCGGCg -3' miRNA: 3'- caUGCGgCCG-GCaGCGGUU------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 37796 | 0.68 | 0.392035 |
Target: 5'- uUGCGuuGGCCacaaaucCGCCAcgcGCCCGGa -3' miRNA: 3'- cAUGCggCCGGca-----GCGGUu--UGGGCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 31438 | 0.68 | 0.383365 |
Target: 5'- cGUGCGCCGcuGCgGcgCGCCGGGCCCc-- -3' miRNA: 3'- -CAUGCGGC--CGgCa-GCGGUUUGGGccg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 45791 | 0.68 | 0.383365 |
Target: 5'- uUGCGCaGG-CGUCGgCAuGCUCGGCg -3' miRNA: 3'- cAUGCGgCCgGCAGCgGUuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 51782 | 0.68 | 0.366411 |
Target: 5'- gGUAgGCCGGCUuaCGCCAuauuucgaagaGACUgGGCu -3' miRNA: 3'- -CAUgCGGCCGGcaGCGGU-----------UUGGgCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 50297 | 0.68 | 0.349981 |
Target: 5'- -aGCgGCCGaCCGUCGCCGAggguucgaaguAUuuGGCg -3' miRNA: 3'- caUG-CGGCcGGCAGCGGUU-----------UGggCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 965 | 0.68 | 0.353225 |
Target: 5'- uGUACGCCGGCgCGaCGacugaaaagCAGgccuggaggucuuucGCCCGGCg -3' miRNA: 3'- -CAUGCGGCCG-GCaGCg--------GUU---------------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30068 | 0.68 | 0.366411 |
Target: 5'- -gACGCaCGGgCGUCGUUucGCCCuucGGCg -3' miRNA: 3'- caUGCG-GCCgGCAGCGGuuUGGG---CCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 16207 | 0.69 | 0.334082 |
Target: 5'- cGUGCGCuCGGCCGaacgGCCGucucGCUCGGg -3' miRNA: 3'- -CAUGCG-GCCGGCag--CGGUu---UGGGCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 45625 | 0.69 | 0.332521 |
Target: 5'- cUGCGCCGaacucuugcccauGCCG-CGCgCGAuagcauccgcgacACCCGGCa -3' miRNA: 3'- cAUGCGGC-------------CGGCaGCG-GUU-------------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 49133 | 0.69 | 0.341964 |
Target: 5'- aUGCGUuuuaaGGCgcgCGUCGUCAAggcggacggGCCCGGCg -3' miRNA: 3'- cAUGCGg----CCG---GCAGCGGUU---------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 45552 | 0.69 | 0.34117 |
Target: 5'- cUAUGCCgccgcguGGCgCGUCGCCcgcgcACUCGGCu -3' miRNA: 3'- cAUGCGG-------CCG-GCAGCGGuu---UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 38577 | 0.69 | 0.334082 |
Target: 5'- -aGCGagaCGGCCGUUcgGCCGAgcgcACgCGGCg -3' miRNA: 3'- caUGCg--GCCGGCAG--CGGUU----UGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 54722 | 0.69 | 0.318718 |
Target: 5'- --cCGUCcGUCGUUGCCc-GCCCGGCg -3' miRNA: 3'- cauGCGGcCGGCAGCGGuuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 10947 | 0.69 | 0.311237 |
Target: 5'- ---gGCCGGCCucGUCGCCGGACgagCGGa -3' miRNA: 3'- caugCGGCCGG--CAGCGGUUUGg--GCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 32217 | 0.69 | 0.317964 |
Target: 5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3' miRNA: 3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 24328 | 0.69 | 0.318718 |
Target: 5'- -cACGCCGGCCGgcaGCaCAcgaaUCGGCg -3' miRNA: 3'- caUGCGGCCGGCag-CG-GUuug-GGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 48066 | 0.69 | 0.341964 |
Target: 5'- gGUGCGCUGcGCauuacgCGCCG-GCCCGGUc -3' miRNA: 3'- -CAUGCGGC-CGgca---GCGGUuUGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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