Results 61 - 80 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 26934 | 0.68 | 0.35813 |
Target: 5'- aUGCGCCGGgCGggCGUCG--UCUGGCg -3' miRNA: 3'- cAUGCGGCCgGCa-GCGGUuuGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 965 | 0.68 | 0.353225 |
Target: 5'- uGUACGCCGGCgCGaCGacugaaaagCAGgccuggaggucuuucGCCCGGCg -3' miRNA: 3'- -CAUGCGGCCG-GCaGCg--------GUU---------------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 50297 | 0.68 | 0.349981 |
Target: 5'- -aGCgGCCGaCCGUCGCCGAggguucgaaguAUuuGGCg -3' miRNA: 3'- caUG-CGGCcGGCAGCGGUU-----------UGggCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30068 | 0.68 | 0.366411 |
Target: 5'- -gACGCaCGGgCGUCGUUucGCCCuucGGCg -3' miRNA: 3'- caUGCG-GCCgGCAGCGGuuUGGG---CCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 22116 | 0.67 | 0.446639 |
Target: 5'- gGUcCGCUGGCCccCGCCGAugCgGGa -3' miRNA: 3'- -CAuGCGGCCGGcaGCGGUUugGgCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 2043 | 0.67 | 0.446639 |
Target: 5'- --cUGCCGGCUGcuuaGCCAca-CCGGCc -3' miRNA: 3'- cauGCGGCCGGCag--CGGUuugGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30466 | 0.67 | 0.435377 |
Target: 5'- uGUGCuGCCGGCCGgcgugaccaucaCGuCCGAACU-GGCg -3' miRNA: 3'- -CAUG-CGGCCGGCa-----------GC-GGUUUGGgCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 12139 | 0.67 | 0.400832 |
Target: 5'- -cGCGCuCGGUgGUgCGgCAAGCgCGGCu -3' miRNA: 3'- caUGCG-GCCGgCA-GCgGUUUGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 33371 | 0.67 | 0.398179 |
Target: 5'- cGUuCGUCGGCCGgcgcugccgacggcUCGCCAucACCCGa- -3' miRNA: 3'- -CAuGCGGCCGGC--------------AGCGGUu-UGGGCcg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 24737 | 0.67 | 0.409753 |
Target: 5'- cGUGCGUcuuCGGCC--CGCUAcacccGACCCGGUc -3' miRNA: 3'- -CAUGCG---GCCGGcaGCGGU-----UUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 433 | 0.67 | 0.446639 |
Target: 5'- -gGCGCaauGCUGggGCUcGACCCGGCg -3' miRNA: 3'- caUGCGgc-CGGCagCGGuUUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 47723 | 0.67 | 0.427961 |
Target: 5'- cGUGCGCagaaGGCCGU-GCUcgGCgguaCGGCg -3' miRNA: 3'- -CAUGCGg---CCGGCAgCGGuuUGg---GCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 39793 | 0.67 | 0.427961 |
Target: 5'- -gGCGUCGGUCGUauucgaGCUucAACCgGGCc -3' miRNA: 3'- caUGCGGCCGGCAg-----CGGu-UUGGgCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 21626 | 0.67 | 0.418797 |
Target: 5'- -cGCGCCGcGCuCGaCGCCGAGCagCGuGCg -3' miRNA: 3'- caUGCGGC-CG-GCaGCGGUUUGg-GC-CG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 27871 | 0.67 | 0.417887 |
Target: 5'- -aACGCCgagGGCgaucccaucaUGUCGCgcaugcaUAAGCCCGGCg -3' miRNA: 3'- caUGCGG---CCG----------GCAGCG-------GUUUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 33952 | 0.67 | 0.409753 |
Target: 5'- -aGCGCCGcCCGcUCGUCGG--CCGGCg -3' miRNA: 3'- caUGCGGCcGGC-AGCGGUUugGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 28740 | 0.67 | 0.434446 |
Target: 5'- --uCGCgGGCUgaagucgauccgggGUCGCCGAcaucgagcCCCGGCa -3' miRNA: 3'- cauGCGgCCGG--------------CAGCGGUUu-------GGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 46711 | 0.67 | 0.427961 |
Target: 5'- --uCGUCGuccgagaauaGCCGcCGCCAAccAUCCGGCg -3' miRNA: 3'- cauGCGGC----------CGGCaGCGGUU--UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 35151 | 0.67 | 0.409753 |
Target: 5'- -cACGCCGuuGCCGUCGUac-ACCC-GCa -3' miRNA: 3'- caUGCGGC--CGGCAGCGguuUGGGcCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 54711 | 0.67 | 0.400832 |
Target: 5'- cGUGcCGUCGGCUuggGUuuucUGCCccGGCCCGGCa -3' miRNA: 3'- -CAU-GCGGCCGG---CA----GCGGu-UUGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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