miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24815 5' -59.9 NC_005284.1 + 32217 0.69 0.317964
Target:  5'- uGUGCGCC-GCCGauagcucuucuUCGaugcgcagcagguUCAGGCCCGGCa -3'
miRNA:   3'- -CAUGCGGcCGGC-----------AGC-------------GGUUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 32516 0.73 0.188862
Target:  5'- -cGCGCUGGCUGuUCGUCAGGCUcgccacccucgCGGCg -3'
miRNA:   3'- caUGCGGCCGGC-AGCGGUUUGG-----------GCCG- -5'
24815 5' -59.9 NC_005284.1 + 32775 0.66 0.456147
Target:  5'- -cACGCCGGUCGcccuguuucUCGUUAcuucuguucgcAGCCCGGa -3'
miRNA:   3'- caUGCGGCCGGC---------AGCGGU-----------UUGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 32974 0.77 0.096713
Target:  5'- -aGCGCCGggcacGCCGUCGCCA---CCGGCu -3'
miRNA:   3'- caUGCGGC-----CGGCAGCGGUuugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33115 0.66 0.456147
Target:  5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3'
miRNA:   3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5'
24815 5' -59.9 NC_005284.1 + 33286 0.78 0.081982
Target:  5'- -aGCGCCGGCCGccaUGCCAAGCagcgCGGCc -3'
miRNA:   3'- caUGCGGCCGGCa--GCGGUUUGg---GCCG- -5'
24815 5' -59.9 NC_005284.1 + 33371 0.67 0.398179
Target:  5'- cGUuCGUCGGCCGgcgcugccgacggcUCGCCAucACCCGa- -3'
miRNA:   3'- -CAuGCGGCCGGC--------------AGCGGUu-UGGGCcg -5'
24815 5' -59.9 NC_005284.1 + 33952 0.67 0.409753
Target:  5'- -aGCGCCGcCCGcUCGUCGG--CCGGCg -3'
miRNA:   3'- caUGCGGCcGGC-AGCGGUUugGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 35151 0.67 0.409753
Target:  5'- -cACGCCGuuGCCGUCGUac-ACCC-GCa -3'
miRNA:   3'- caUGCGGC--CGGCAGCGguuUGGGcCG- -5'
24815 5' -59.9 NC_005284.1 + 35963 0.73 0.188862
Target:  5'- -cACGcCCGGCCccuUCGCCGggAACCaCGGCc -3'
miRNA:   3'- caUGC-GGCCGGc--AGCGGU--UUGG-GCCG- -5'
24815 5' -59.9 NC_005284.1 + 36101 0.66 0.475482
Target:  5'- cUugGUCGcGUCGUCGC--GAUUCGGCg -3'
miRNA:   3'- cAugCGGC-CGGCAGCGguUUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36283 0.73 0.184017
Target:  5'- cGUACGCCGGaaucgaCGUcaCGCCGAGCgcguucUCGGCg -3'
miRNA:   3'- -CAUGCGGCCg-----GCA--GCGGUUUG------GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36585 0.73 0.179281
Target:  5'- uGUGCGCCGucGUCGaUCGCCGcguacuucCCCGGCu -3'
miRNA:   3'- -CAUGCGGC--CGGC-AGCGGUuu------GGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 36909 0.66 0.485302
Target:  5'- aUGCGCCcGCCGau-CCGGGgCCGGCc -3'
miRNA:   3'- cAUGCGGcCGGCagcGGUUUgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37286 0.7 0.275841
Target:  5'- -gACGgcauaUCGGCCGacgCGaCCAccGACCCGGCg -3'
miRNA:   3'- caUGC-----GGCCGGCa--GC-GGU--UUGGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37381 0.66 0.465763
Target:  5'- -gACGCCgcGGUCGUCGCCGuAGCgUuGCa -3'
miRNA:   3'- caUGCGG--CCGGCAGCGGU-UUGgGcCG- -5'
24815 5' -59.9 NC_005284.1 + 37422 0.66 0.505224
Target:  5'- cGUA-GCCGGCCGggaCGUUAucgcAgCCGGCc -3'
miRNA:   3'- -CAUgCGGCCGGCa--GCGGUu---UgGGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37789 0.7 0.282654
Target:  5'- -cGCGUCGGCgauCGUCGCCGuguGCgcguUCGGCg -3'
miRNA:   3'- caUGCGGCCG---GCAGCGGUu--UG----GGCCG- -5'
24815 5' -59.9 NC_005284.1 + 37796 0.68 0.392035
Target:  5'- uUGCGuuGGCCacaaaucCGCCAcgcGCCCGGa -3'
miRNA:   3'- cAUGCggCCGGca-----GCGGUu--UGGGCCg -5'
24815 5' -59.9 NC_005284.1 + 38115 0.66 0.465763
Target:  5'- -gACGCCGGCCucaCGCUcgacggccggaAAACCCGa- -3'
miRNA:   3'- caUGCGGCCGGca-GCGG-----------UUUGGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.