Results 121 - 122 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 33115 | 0.66 | 0.456147 |
Target: 5'- -gACGgCGGCCacCGCCG-ACgCGGCg -3' miRNA: 3'- caUGCgGCCGGcaGCGGUuUGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30236 | 0.66 | 0.505224 |
Target: 5'- -gGCGUCGGUC-UgGCCGGAuauugUCCGGCc -3' miRNA: 3'- caUGCGGCCGGcAgCGGUUU-----GGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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