Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24815 | 5' | -59.9 | NC_005284.1 | + | 15959 | 0.73 | 0.170134 |
Target: 5'- -gACGCCGGCCcacguUCGCCGuguucAACggCCGGCg -3' miRNA: 3'- caUGCGGCCGGc----AGCGGU-----UUG--GGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 30658 | 0.73 | 0.165719 |
Target: 5'- uGUGCGUgCGGCCGUCGagCAGccGgCCGGCg -3' miRNA: 3'- -CAUGCG-GCCGGCAGCg-GUU--UgGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 47163 | 0.74 | 0.145153 |
Target: 5'- uGUACGaCCGGCgCGUacaucaggCGCCGAACCCGa- -3' miRNA: 3'- -CAUGC-GGCCG-GCA--------GCGGUUUGGGCcg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 17837 | 0.74 | 0.14133 |
Target: 5'- uGUGCGCCGggacaggugaucGCCGUUGCCGAcccaaagaaGgCCGGCc -3' miRNA: 3'- -CAUGCGGC------------CGGCAGCGGUU---------UgGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 46033 | 0.7 | 0.2896 |
Target: 5'- uGU-CGCCGGgCGUCGagCAGGCCucgaCGGCa -3' miRNA: 3'- -CAuGCGGCCgGCAGCg-GUUUGG----GCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 50824 | 0.7 | 0.2896 |
Target: 5'- aGUGCGauGGCCGUUggGUgGGGCCgGGCg -3' miRNA: 3'- -CAUGCggCCGGCAG--CGgUUUGGgCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 37796 | 0.68 | 0.392035 |
Target: 5'- uUGCGuuGGCCacaaaucCGCCAcgcGCCCGGa -3' miRNA: 3'- cAUGCggCCGGca-----GCGGUu--UGGGCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 31438 | 0.68 | 0.383365 |
Target: 5'- cGUGCGCCGcuGCgGcgCGCCGGGCCCc-- -3' miRNA: 3'- -CAUGCGGC--CGgCa-GCGGUUUGGGccg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 45791 | 0.68 | 0.383365 |
Target: 5'- uUGCGCaGG-CGUCGgCAuGCUCGGCg -3' miRNA: 3'- cAUGCGgCCgGCAGCgGUuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 51782 | 0.68 | 0.366411 |
Target: 5'- gGUAgGCCGGCUuaCGCCAuauuucgaagaGACUgGGCu -3' miRNA: 3'- -CAUgCGGCCGGcaGCGGU-----------UUGGgCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 26934 | 0.68 | 0.35813 |
Target: 5'- aUGCGCCGGgCGggCGUCG--UCUGGCg -3' miRNA: 3'- cAUGCGGCCgGCa-GCGGUuuGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 965 | 0.68 | 0.353225 |
Target: 5'- uGUACGCCGGCgCGaCGacugaaaagCAGgccuggaggucuuucGCCCGGCg -3' miRNA: 3'- -CAUGCGGCCG-GCaGCg--------GUU---------------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 50297 | 0.68 | 0.349981 |
Target: 5'- -aGCgGCCGaCCGUCGCCGAggguucgaaguAUuuGGCg -3' miRNA: 3'- caUG-CGGCcGGCAGCGGUU-----------UGggCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 49133 | 0.69 | 0.341964 |
Target: 5'- aUGCGUuuuaaGGCgcgCGUCGUCAAggcggacggGCCCGGCg -3' miRNA: 3'- cAUGCGg----CCG---GCAGCGGUU---------UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 48066 | 0.69 | 0.341964 |
Target: 5'- gGUGCGCUGcGCauuacgCGCCG-GCCCGGUc -3' miRNA: 3'- -CAUGCGGC-CGgca---GCGGUuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 45552 | 0.69 | 0.34117 |
Target: 5'- cUAUGCCgccgcguGGCgCGUCGCCcgcgcACUCGGCu -3' miRNA: 3'- cAUGCGG-------CCG-GCAGCGGuu---UGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 38577 | 0.69 | 0.334082 |
Target: 5'- -aGCGagaCGGCCGUUcgGCCGAgcgcACgCGGCg -3' miRNA: 3'- caUGCg--GCCGGCAG--CGGUU----UGgGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 54722 | 0.69 | 0.318718 |
Target: 5'- --cCGUCcGUCGUUGCCc-GCCCGGCg -3' miRNA: 3'- cauGCGGcCGGCAGCGGuuUGGGCCG- -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 10947 | 0.69 | 0.311237 |
Target: 5'- ---gGCCGGCCucGUCGCCGGACgagCGGa -3' miRNA: 3'- caugCGGCCGG--CAGCGGUUUGg--GCCg -5' |
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24815 | 5' | -59.9 | NC_005284.1 | + | 48119 | 1.12 | 0.000251 |
Target: 5'- cGUACGCCGGCCGUCGCCAAACCCGGCg -3' miRNA: 3'- -CAUGCGGCCGGCAGCGGUUUGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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