Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24816 | 5' | -57.5 | NC_005284.1 | + | 1167 | 0.66 | 0.603953 |
Target: 5'- gCUC-GUCUCGUCGAUCuGCGUAUUg -3' miRNA: 3'- gGAGcCGGAGCGGCUAGcUGCGUAGu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 47712 | 0.69 | 0.421954 |
Target: 5'- -gUCGGCaa-GCCGAUCGGCGUcggugaacGUCGg -3' miRNA: 3'- ggAGCCGgagCGGCUAGCUGCG--------UAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 43196 | 0.72 | 0.29094 |
Target: 5'- gCUCGGCCgcguagUCGCCGAgCucCGCGUCGa -3' miRNA: 3'- gGAGCCGG------AGCGGCUaGcuGCGUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 47984 | 1.1 | 0.000581 |
Target: 5'- cCCUCGGCCUCGCCGAUCGACGCAUCAa -3' miRNA: 3'- -GGAGCCGGAGCGGCUAGCUGCGUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 21207 | 0.67 | 0.540498 |
Target: 5'- -aUCGGCUUCGCUGGUgGGUGCcgaaGUCAg -3' miRNA: 3'- ggAGCCGGAGCGGCUAgCUGCG----UAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 48125 | 0.68 | 0.509586 |
Target: 5'- --cCGGCCgUCGCCaaaccCGGCGCGUCu -3' miRNA: 3'- ggaGCCGG-AGCGGcua--GCUGCGUAGu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 1817 | 0.66 | 0.646813 |
Target: 5'- gCCUCGGCaaCUCGaaGcAUCGGCaggauuGCGUCGa -3' miRNA: 3'- -GGAGCCG--GAGCggC-UAGCUG------CGUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 45150 | 0.66 | 0.624299 |
Target: 5'- gCUCGGCCUgcgcugaagccucCGCCGcUUG-CGCGUUc -3' miRNA: 3'- gGAGCCGGA-------------GCGGCuAGCuGCGUAGu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 32148 | 0.66 | 0.614655 |
Target: 5'- --gCGGCCgaUCGUaaCGAUCGAUGCAggUCGc -3' miRNA: 3'- ggaGCCGG--AGCG--GCUAGCUGCGU--AGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 33116 | 0.69 | 0.421954 |
Target: 5'- aCggCGGCCacCGCCGAcgCGGCgGCAUCGu -3' miRNA: 3'- gGa-GCCGGa-GCGGCUa-GCUG-CGUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 14187 | 0.68 | 0.489394 |
Target: 5'- uCCUCGGCUgcucgcgugaagUUGCCGugucuugCGGCuGCGUCGa -3' miRNA: 3'- -GGAGCCGG------------AGCGGCua-----GCUG-CGUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 7304 | 0.68 | 0.499445 |
Target: 5'- uCCUCGGUgUgGCCGAcgUCGA-GCAUg- -3' miRNA: 3'- -GGAGCCGgAgCGGCU--AGCUgCGUAgu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 46533 | 0.66 | 0.593274 |
Target: 5'- gCUCGGCCaacgucUUGCCGAgccgcagcgCGAgCGaCAUCAg -3' miRNA: 3'- gGAGCCGG------AGCGGCUa--------GCU-GC-GUAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 49712 | 0.69 | 0.469584 |
Target: 5'- --aCGGaUCUUGUCGAUCGGCGUcgCAu -3' miRNA: 3'- ggaGCC-GGAGCGGCUAGCUGCGuaGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 52047 | 0.67 | 0.582625 |
Target: 5'- uCCUCGGCCagcgUGCUGAcaguuccaUCGACGUu--- -3' miRNA: 3'- -GGAGCCGGa---GCGGCU--------AGCUGCGuagu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 7340 | 0.68 | 0.499445 |
Target: 5'- uUCUCGGCC-CgGuuGAUCGGCGaGUCc -3' miRNA: 3'- -GGAGCCGGaG-CggCUAGCUGCgUAGu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 52773 | 0.69 | 0.440663 |
Target: 5'- -aUCGGCC-CGCCGuaAUCGcCGCcUCAa -3' miRNA: 3'- ggAGCCGGaGCGGC--UAGCuGCGuAGU- -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 47432 | 0.7 | 0.37735 |
Target: 5'- -aUCGGCCgCGUCGAgaucggUCGACGCAa-- -3' miRNA: 3'- ggAGCCGGaGCGGCU------AGCUGCGUagu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 5624 | 0.67 | 0.562508 |
Target: 5'- uCCUCcaucGCCUCGCCGGgcccguccgccuugaCGACGCGc-- -3' miRNA: 3'- -GGAGc---CGGAGCGGCUa--------------GCUGCGUagu -5' |
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24816 | 5' | -57.5 | NC_005284.1 | + | 39441 | 0.68 | 0.509586 |
Target: 5'- gCCaUCGGCCUgcaCGCCGAgCGACaCgAUCAc -3' miRNA: 3'- -GG-AGCCGGA---GCGGCUaGCUGcG-UAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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