miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24816 5' -57.5 NC_005284.1 + 33116 0.69 0.421954
Target:  5'- aCggCGGCCacCGCCGAcgCGGCgGCAUCGu -3'
miRNA:   3'- gGa-GCCGGa-GCGGCUa-GCUG-CGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 34587 0.68 0.530119
Target:  5'- uUCUCGGCgUCGCUGuaUGGCGaAUCAg -3'
miRNA:   3'- -GGAGCCGgAGCGGCuaGCUGCgUAGU- -5'
24816 5' -57.5 NC_005284.1 + 36822 0.72 0.320454
Target:  5'- gCUUCGGCCUCGCCc-UUGGCG-AUCGc -3'
miRNA:   3'- -GGAGCCGGAGCGGcuAGCUGCgUAGU- -5'
24816 5' -57.5 NC_005284.1 + 39441 0.68 0.509586
Target:  5'- gCCaUCGGCCUgcaCGCCGAgCGACaCgAUCAc -3'
miRNA:   3'- -GG-AGCCGGA---GCGGCUaGCUGcG-UAGU- -5'
24816 5' -57.5 NC_005284.1 + 41609 0.66 0.625372
Target:  5'- ---aGGCCgCGCCGAgugCGAgcuccgacaCGCAUCGg -3'
miRNA:   3'- ggagCCGGaGCGGCUa--GCU---------GCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 42191 0.68 0.530119
Target:  5'- aCUCGGUCUCGgcCCGGUCGGgauuuauaucCGCAg-- -3'
miRNA:   3'- gGAGCCGGAGC--GGCUAGCU----------GCGUagu -5'
24816 5' -57.5 NC_005284.1 + 42995 0.66 0.603953
Target:  5'- gCUCcGCCUCgGCCGuGUUGAUGCGcUCGa -3'
miRNA:   3'- gGAGcCGGAG-CGGC-UAGCUGCGU-AGU- -5'
24816 5' -57.5 NC_005284.1 + 43196 0.72 0.29094
Target:  5'- gCUCGGCCgcguagUCGCCGAgCucCGCGUCGa -3'
miRNA:   3'- gGAGCCGG------AGCGGCUaGcuGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 45150 0.66 0.624299
Target:  5'- gCUCGGCCUgcgcugaagccucCGCCGcUUG-CGCGUUc -3'
miRNA:   3'- gGAGCCGGA-------------GCGGCuAGCuGCGUAGu -5'
24816 5' -57.5 NC_005284.1 + 46533 0.66 0.593274
Target:  5'- gCUCGGCCaacgucUUGCCGAgccgcagcgCGAgCGaCAUCAg -3'
miRNA:   3'- gGAGCCGG------AGCGGCUa--------GCU-GC-GUAGU- -5'
24816 5' -57.5 NC_005284.1 + 47432 0.7 0.37735
Target:  5'- -aUCGGCCgCGUCGAgaucggUCGACGCAa-- -3'
miRNA:   3'- ggAGCCGGaGCGGCU------AGCUGCGUagu -5'
24816 5' -57.5 NC_005284.1 + 47712 0.69 0.421954
Target:  5'- -gUCGGCaa-GCCGAUCGGCGUcggugaacGUCGg -3'
miRNA:   3'- ggAGCCGgagCGGCUAGCUGCG--------UAGU- -5'
24816 5' -57.5 NC_005284.1 + 47984 1.1 0.000581
Target:  5'- cCCUCGGCCUCGCCGAUCGACGCAUCAa -3'
miRNA:   3'- -GGAGCCGGAGCGGCUAGCUGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 48125 0.68 0.509586
Target:  5'- --cCGGCCgUCGCCaaaccCGGCGCGUCu -3'
miRNA:   3'- ggaGCCGG-AGCGGcua--GCUGCGUAGu -5'
24816 5' -57.5 NC_005284.1 + 49605 0.71 0.335239
Target:  5'- uCUUCGGCgUCaaguggcguuugaGCUGAUCG-CGCGUCAg -3'
miRNA:   3'- -GGAGCCGgAG-------------CGGCUAGCuGCGUAGU- -5'
24816 5' -57.5 NC_005284.1 + 49712 0.69 0.469584
Target:  5'- --aCGGaUCUUGUCGAUCGGCGUcgCAu -3'
miRNA:   3'- ggaGCC-GGAGCGGCUAGCUGCGuaGU- -5'
24816 5' -57.5 NC_005284.1 + 52047 0.67 0.582625
Target:  5'- uCCUCGGCCagcgUGCUGAcaguuccaUCGACGUu--- -3'
miRNA:   3'- -GGAGCCGGa---GCGGCU--------AGCUGCGuagu -5'
24816 5' -57.5 NC_005284.1 + 52773 0.69 0.440663
Target:  5'- -aUCGGCC-CGCCGuaAUCGcCGCcUCAa -3'
miRNA:   3'- ggAGCCGGaGCGGC--UAGCuGCGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.