miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 3' -55 NC_005284.1 + 33757 0.75 0.285046
Target:  5'- uGUCGCGAcauucuguCGAAGU---GCGCCGGCGCc -3'
miRNA:   3'- -CAGUGCU--------GCUUUAugcCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 54675 0.75 0.271055
Target:  5'- -aCGCGGCGAAG-ACGGCGCgCGaGCGg -3'
miRNA:   3'- caGUGCUGCUUUaUGCCGCG-GC-CGCg -5'
24817 3' -55 NC_005284.1 + 14836 0.75 0.257623
Target:  5'- aUCGCGGCcccGAGUGCGGCuauaCCGGUGCg -3'
miRNA:   3'- cAGUGCUGc--UUUAUGCCGc---GGCCGCG- -5'
24817 3' -55 NC_005284.1 + 6945 0.77 0.214867
Target:  5'- cGUCGCacCGGAGaa-GGCGCCGGCGCc -3'
miRNA:   3'- -CAGUGcuGCUUUaugCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 9484 0.78 0.178343
Target:  5'- aGUCGCGGCGAcgcagGCGGCgacagcguggGUCGGCGCc -3'
miRNA:   3'- -CAGUGCUGCUuua--UGCCG----------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 48857 0.72 0.398817
Target:  5'- -cCGCGagGCGAAAgcgGCGGagaaGUCGGCGCc -3'
miRNA:   3'- caGUGC--UGCUUUa--UGCCg---CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 21815 0.71 0.436252
Target:  5'- gGUgGCGACGgcGUGCccGGCgcuuccagcgccGCCGGCGUg -3'
miRNA:   3'- -CAgUGCUGCuuUAUG--CCG------------CGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 9760 0.69 0.552695
Target:  5'- --gGCGGuCGAGGcgACGGCGCaagcucacgucgcaaCGGCGCg -3'
miRNA:   3'- cagUGCU-GCUUUa-UGCCGCG---------------GCCGCG- -5'
24817 3' -55 NC_005284.1 + 38687 0.7 0.536713
Target:  5'- -aCGCGGCGAAaggcucgauggacGUAuCGGCuGCCGGCu- -3'
miRNA:   3'- caGUGCUGCUU-------------UAU-GCCG-CGGCCGcg -5'
24817 3' -55 NC_005284.1 + 19394 0.7 0.527201
Target:  5'- cGUgAuCGACGAGggcgGUGCaGGCGUgauCGGCGCg -3'
miRNA:   3'- -CAgU-GCUGCUU----UAUG-CCGCG---GCCGCG- -5'
24817 3' -55 NC_005284.1 + 26188 0.7 0.516707
Target:  5'- -aUugG-UGAu-UACGGUGCCGGCGUu -3'
miRNA:   3'- caGugCuGCUuuAUGCCGCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 38776 0.7 0.506297
Target:  5'- uGUC-CGGCGAAGUaguugcgaucAUGGCGCUcgauGGCGUc -3'
miRNA:   3'- -CAGuGCUGCUUUA----------UGCCGCGG----CCGCG- -5'
24817 3' -55 NC_005284.1 + 23343 0.7 0.506297
Target:  5'- gGUgAUGGCGGAAagcgGCGGCGuuGGCc- -3'
miRNA:   3'- -CAgUGCUGCUUUa---UGCCGCggCCGcg -5'
24817 3' -55 NC_005284.1 + 22865 0.7 0.506297
Target:  5'- --gGCGGCGGGA-AgGGCGUCGaGCGCc -3'
miRNA:   3'- cagUGCUGCUUUaUgCCGCGGC-CGCG- -5'
24817 3' -55 NC_005284.1 + 27642 0.7 0.500094
Target:  5'- -gCGCGACGAcaaccucgggcaaucGccgcuAUACGG-GCCGGCGUg -3'
miRNA:   3'- caGUGCUGCU---------------U-----UAUGCCgCGGCCGCG- -5'
24817 3' -55 NC_005284.1 + 15144 0.7 0.495978
Target:  5'- --aGCGGCGAGAuaUACGuGCGCUGcCGCa -3'
miRNA:   3'- cagUGCUGCUUU--AUGC-CGCGGCcGCG- -5'
24817 3' -55 NC_005284.1 + 31427 0.71 0.475634
Target:  5'- uUCGCgGGCGAcGUGCGcCGCugCGGCGCg -3'
miRNA:   3'- cAGUG-CUGCUuUAUGCcGCG--GCCGCG- -5'
24817 3' -55 NC_005284.1 + 10659 0.71 0.465619
Target:  5'- -gCGCGAgGAAcugGUGCGcGcCGCgGGCGCg -3'
miRNA:   3'- caGUGCUgCUU---UAUGC-C-GCGgCCGCG- -5'
24817 3' -55 NC_005284.1 + 9926 0.71 0.445924
Target:  5'- cUCGCGcagcaGCGgcGUACGGCGCUugaGGCGg -3'
miRNA:   3'- cAGUGC-----UGCuuUAUGCCGCGG---CCGCg -5'
24817 3' -55 NC_005284.1 + 16032 0.71 0.445924
Target:  5'- -gCGCGACGAGAUcCGcauuGCGCCGGUa- -3'
miRNA:   3'- caGUGCUGCUUUAuGC----CGCGGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.