miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24817 5' -57.4 NC_005284.1 + 7117 0.67 0.541624
Target:  5'- -aGCGGCAUCGAucaacGCCugaaCCUUCGCGc -3'
miRNA:   3'- caCGCCGUGGCUcua--UGG----GGAAGCGU- -5'
24817 5' -57.4 NC_005284.1 + 8982 0.68 0.478367
Target:  5'- cGUGCGGacaccuuCGCCGAGcAUGCCgacgCCUgCGCAa -3'
miRNA:   3'- -CACGCC-------GUGGCUC-UAUGG----GGAaGCGU- -5'
24817 5' -57.4 NC_005284.1 + 16198 0.66 0.552278
Target:  5'- -gGCGGCAUCGugcAGAUGCUCagucCGCAa -3'
miRNA:   3'- caCGCCGUGGC---UCUAUGGGgaa-GCGU- -5'
24817 5' -57.4 NC_005284.1 + 30424 0.68 0.430298
Target:  5'- cGUGCGcGaCGgCGAGGUGCUgUUUCGCGa -3'
miRNA:   3'- -CACGC-C-GUgGCUCUAUGGgGAAGCGU- -5'
24817 5' -57.4 NC_005284.1 + 33178 0.7 0.333569
Target:  5'- -cGCGGCGCgCGAGAUcuuGCCCaacgCUUCgGCAu -3'
miRNA:   3'- caCGCCGUG-GCUCUA---UGGG----GAAG-CGU- -5'
24817 5' -57.4 NC_005284.1 + 38493 0.69 0.402304
Target:  5'- -aGCGGCACCGGcucGCCCUg-CGCAg -3'
miRNA:   3'- caCGCCGUGGCUcuaUGGGGaaGCGU- -5'
24817 5' -57.4 NC_005284.1 + 38700 0.77 0.118309
Target:  5'- aGUGCGGCGCCGAGAaucguguugaagaGCCCCccgCGCu -3'
miRNA:   3'- -CACGCCGUGGCUCUa------------UGGGGaa-GCGu -5'
24817 5' -57.4 NC_005284.1 + 41365 0.66 0.572687
Target:  5'- cUGCGGauCGCCGAGAcACgCCCgcggucacgauguUUCGCGa -3'
miRNA:   3'- cACGCC--GUGGCUCUaUG-GGG-------------AAGCGU- -5'
24817 5' -57.4 NC_005284.1 + 47240 0.66 0.595443
Target:  5'- -cGCGGCACgcAGAauguuUugCCCUUCGUc -3'
miRNA:   3'- caCGCCGUGgcUCU-----AugGGGAAGCGu -5'
24817 5' -57.4 NC_005284.1 + 47860 0.95 0.006514
Target:  5'- gGUGCGaCGCCGAGAUACCCCUUCGCAc -3'
miRNA:   3'- -CACGCcGUGGCUCUAUGGGGAAGCGU- -5'
24817 5' -57.4 NC_005284.1 + 48270 0.66 0.606331
Target:  5'- cGUGCgGGCACUGAGGaGCCUaugaGCGu -3'
miRNA:   3'- -CACG-CCGUGGCUCUaUGGGgaagCGU- -5'
24817 5' -57.4 NC_005284.1 + 48928 0.7 0.336794
Target:  5'- uUGCGGCGCCGAuguagaucuugaucaGAUcgucggcaACCCCUgcguccUCGCGc -3'
miRNA:   3'- cACGCCGUGGCU---------------CUA--------UGGGGA------AGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.