miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24818 5' -54.4 NC_005284.1 + 23286 0.66 0.791549
Target:  5'- cGGUGccGAUaUCGGCGUGUaucccGGCGucGUCGAc -3'
miRNA:   3'- -CCAC--UUGcAGCCGCGCA-----UCGU--CAGCU- -5'
24818 5' -54.4 NC_005284.1 + 54172 0.66 0.791549
Target:  5'- --cGGAU-UCGGUGCGUAGgGGUCa- -3'
miRNA:   3'- ccaCUUGcAGCCGCGCAUCgUCAGcu -5'
24818 5' -54.4 NC_005284.1 + 39317 0.66 0.781738
Target:  5'- cGGcGAGauaccaGUCGcGCacgaucGCGUAGCAGUCGu -3'
miRNA:   3'- -CCaCUUg-----CAGC-CG------CGCAUCGUCAGCu -5'
24818 5' -54.4 NC_005284.1 + 12118 0.66 0.761669
Target:  5'- cGGUGucucugaugcCGUCGGCGCGcucGGUGGUgCGGc -3'
miRNA:   3'- -CCACuu--------GCAGCCGCGCa--UCGUCA-GCU- -5'
24818 5' -54.4 NC_005284.1 + 40396 0.66 0.759631
Target:  5'- --aGcAUGUCGGCGCcgauuuccguGCAGUCGAc -3'
miRNA:   3'- ccaCuUGCAGCCGCGcau-------CGUCAGCU- -5'
24818 5' -54.4 NC_005284.1 + 21676 0.67 0.720042
Target:  5'- ----cGCGUCGGCG-GUGGCcgccGUCGAc -3'
miRNA:   3'- ccacuUGCAGCCGCgCAUCGu---CAGCU- -5'
24818 5' -54.4 NC_005284.1 + 29879 0.68 0.687877
Target:  5'- uGGUcGGCGcCGGCGUGUuccaaGGCGaauGUCGAg -3'
miRNA:   3'- -CCAcUUGCaGCCGCGCA-----UCGU---CAGCU- -5'
24818 5' -54.4 NC_005284.1 + 45652 0.68 0.677034
Target:  5'- uGGcgGcuCGUCGGUGCGcgaGGCGGUgGAa -3'
miRNA:   3'- -CCa-CuuGCAGCCGCGCa--UCGUCAgCU- -5'
24818 5' -54.4 NC_005284.1 + 16439 0.68 0.644297
Target:  5'- aGGUGGugGU-GGCG-GUGGCAGcagUGAa -3'
miRNA:   3'- -CCACUugCAgCCGCgCAUCGUCa--GCU- -5'
24818 5' -54.4 NC_005284.1 + 33999 0.69 0.622399
Target:  5'- gGGUGcGGCGagggccgauUCuGCGCGUucgaGGCGGUCGAg -3'
miRNA:   3'- -CCAC-UUGC---------AGcCGCGCA----UCGUCAGCU- -5'
24818 5' -54.4 NC_005284.1 + 53579 0.7 0.578778
Target:  5'- uGG-GGGCGUgCGGC-UGUGGCGGUCa- -3'
miRNA:   3'- -CCaCUUGCA-GCCGcGCAUCGUCAGcu -5'
24818 5' -54.4 NC_005284.1 + 24638 0.7 0.546489
Target:  5'- cGGcGAACugaccgucuucaGUCGcGCGCGgcguGCAGUCGAc -3'
miRNA:   3'- -CCaCUUG------------CAGC-CGCGCau--CGUCAGCU- -5'
24818 5' -54.4 NC_005284.1 + 11870 0.71 0.514795
Target:  5'- -cUGGcGCGUCGGCGUGaAGCGGgCGAu -3'
miRNA:   3'- ccACU-UGCAGCCGCGCaUCGUCaGCU- -5'
24818 5' -54.4 NC_005284.1 + 18220 0.74 0.33688
Target:  5'- --cGGACGcUCGGCG-GUGGCGGUUGGg -3'
miRNA:   3'- ccaCUUGC-AGCCGCgCAUCGUCAGCU- -5'
24818 5' -54.4 NC_005284.1 + 17705 0.74 0.328843
Target:  5'- -cUGAAucuCGcCGGCGCGUcgauGGCGGUCGAg -3'
miRNA:   3'- ccACUU---GCaGCCGCGCA----UCGUCAGCU- -5'
24818 5' -54.4 NC_005284.1 + 47732 1.11 0.000975
Target:  5'- cGGUGAACGUCGGCGCGUAGCAGUCGAu -3'
miRNA:   3'- -CCACUUGCAGCCGCGCAUCGUCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.