miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24819 5' -55 NC_005284.1 + 11389 0.68 0.611644
Target:  5'- aUUugUCGCGCcucgacaGCGCGgGACUUgaCGCg -3'
miRNA:   3'- cAGugAGCGCG-------CGCGC-UUGAAgaGCG- -5'
24819 5' -55 NC_005284.1 + 44714 0.69 0.558265
Target:  5'- gGUCGCggUCGC-CGCGCGuuccgCUCGCu -3'
miRNA:   3'- -CAGUG--AGCGcGCGCGCuugaaGAGCG- -5'
24819 5' -55 NC_005284.1 + 33171 0.69 0.558265
Target:  5'- cGUCGagCGCgGCGCGCGAGa-UCUUGCc -3'
miRNA:   3'- -CAGUgaGCG-CGCGCGCUUgaAGAGCG- -5'
24819 5' -55 NC_005284.1 + 4674 0.69 0.558265
Target:  5'- -aCGC-CGCGUGCGCGAucgccgcguuACgUUCUCGa -3'
miRNA:   3'- caGUGaGCGCGCGCGCU----------UG-AAGAGCg -5'
24819 5' -55 NC_005284.1 + 40159 0.69 0.547514
Target:  5'- uUCACggcgUCGagguaGCGCGCGAGCgUUCggCGCc -3'
miRNA:   3'- cAGUG----AGCg----CGCGCGCUUG-AAGa-GCG- -5'
24819 5' -55 NC_005284.1 + 39693 0.69 0.546443
Target:  5'- -gCACUCGCGCGgauacucUGCGAGCgcgugCGCc -3'
miRNA:   3'- caGUGAGCGCGC-------GCGCUUGaaga-GCG- -5'
24819 5' -55 NC_005284.1 + 17035 0.7 0.526219
Target:  5'- -cCGCUUGcCGCGCGCGGGauuuccUCUCGg -3'
miRNA:   3'- caGUGAGC-GCGCGCGCUUga----AGAGCg -5'
24819 5' -55 NC_005284.1 + 44193 0.67 0.667623
Target:  5'- aUCAgUCGCccgaucuCGCGCGA-UUUCUCGUc -3'
miRNA:   3'- cAGUgAGCGc------GCGCGCUuGAAGAGCG- -5'
24819 5' -55 NC_005284.1 + 33628 0.67 0.678541
Target:  5'- cGUUGCUCGagcCGCGCGCGGcaUUCaucaCGCg -3'
miRNA:   3'- -CAGUGAGC---GCGCGCGCUugAAGa---GCG- -5'
24819 5' -55 NC_005284.1 + 47338 0.66 0.753114
Target:  5'- cGUCGCUCGCGaacgucguCGCGuCGAuuuCUUC-CGa -3'
miRNA:   3'- -CAGUGAGCGC--------GCGC-GCUu--GAAGaGCg -5'
24819 5' -55 NC_005284.1 + 24373 0.66 0.753114
Target:  5'- cUCGCcgUCGCGCaCGCGGACga-UCGa -3'
miRNA:   3'- cAGUG--AGCGCGcGCGCUUGaagAGCg -5'
24819 5' -55 NC_005284.1 + 8972 0.66 0.753114
Target:  5'- --uGCUCGaguGCGUGCGGACaccUUCGCc -3'
miRNA:   3'- cagUGAGCg--CGCGCGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 54668 0.66 0.732251
Target:  5'- cUUAUUCaGCGCGCGUuuaccgGGAUUUCcCGCa -3'
miRNA:   3'- cAGUGAG-CGCGCGCG------CUUGAAGaGCG- -5'
24819 5' -55 NC_005284.1 + 53161 0.66 0.721663
Target:  5'- --aGCUUGCGCGCcaugucgagcGCGAGCacgcaaUCUUGCc -3'
miRNA:   3'- cagUGAGCGCGCG----------CGCUUGa-----AGAGCG- -5'
24819 5' -55 NC_005284.1 + 6625 0.66 0.721663
Target:  5'- cGUCACUUcgccaGCGCGCGCcgGAAUgggCUCu- -3'
miRNA:   3'- -CAGUGAG-----CGCGCGCG--CUUGaa-GAGcg -5'
24819 5' -55 NC_005284.1 + 47950 0.66 0.710987
Target:  5'- aUCGaUCGCGCGCGCcAACUcggUGCg -3'
miRNA:   3'- cAGUgAGCGCGCGCGcUUGAagaGCG- -5'
24819 5' -55 NC_005284.1 + 10372 0.66 0.707769
Target:  5'- aGUCGCcaacgaggcaguaaUCGCGCGuCGaCGAACUcaUCGUu -3'
miRNA:   3'- -CAGUG--------------AGCGCGC-GC-GCUUGAagAGCG- -5'
24819 5' -55 NC_005284.1 + 24627 0.67 0.700234
Target:  5'- cGUCACcUGUGCG-GCGAACUgaccgucuUCagUCGCg -3'
miRNA:   3'- -CAGUGaGCGCGCgCGCUUGA--------AG--AGCG- -5'
24819 5' -55 NC_005284.1 + 48251 0.67 0.689415
Target:  5'- -aCugUCGCGCGCcUGAGCgccUUCGUc -3'
miRNA:   3'- caGugAGCGCGCGcGCUUGaa-GAGCG- -5'
24819 5' -55 NC_005284.1 + 9345 0.67 0.68833
Target:  5'- gGUCGCccgacaaUCGCGaCGcCGCGAAUaUCgUCGCc -3'
miRNA:   3'- -CAGUG-------AGCGC-GC-GCGCUUGaAG-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.