miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 3' -54.2 NC_005284.1 + 1396 0.71 0.496789
Target:  5'- cGGAguuCGACGUCgcugGCauccgCGCACAGCUagcaGGa -3'
miRNA:   3'- -CCU---GCUGUAGa---CGa----GCGUGUCGAg---CC- -5'
24820 3' -54.2 NC_005284.1 + 3457 0.66 0.804486
Target:  5'- --cCGAgcCAUUUGCgcuguuccUCGgACAGCUCGGg -3'
miRNA:   3'- ccuGCU--GUAGACG--------AGCgUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 5281 0.66 0.81392
Target:  5'- uGAUGcCGUCgUGCUCGCACuucguGUUgCGGu -3'
miRNA:   3'- cCUGCuGUAG-ACGAGCGUGu----CGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 6888 0.71 0.507152
Target:  5'- cGGCGGgAaCUGCUCGCGCAuaGCgCGGu -3'
miRNA:   3'- cCUGCUgUaGACGAGCGUGU--CGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 8237 0.71 0.528145
Target:  5'- --cUGAUGUC-GCUCGCgcuGCGGCUCGGc -3'
miRNA:   3'- ccuGCUGUAGaCGAGCG---UGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 9031 0.71 0.476357
Target:  5'- gGGugucuCGGCAgauaCUGCUCGUauggggcucguGCAGCUUGGa -3'
miRNA:   3'- -CCu----GCUGUa---GACGAGCG-----------UGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 9415 0.66 0.78509
Target:  5'- cGACGGCAUCgugaaacucgGCgugUCGCucGCGGC-CGGg -3'
miRNA:   3'- cCUGCUGUAGa---------CG---AGCG--UGUCGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 9910 0.67 0.712808
Target:  5'- cGAa-GCGUCgcucgcGCUCGCGCAGCagCGGc -3'
miRNA:   3'- cCUgcUGUAGa-----CGAGCGUGUCGa-GCC- -5'
24820 3' -54.2 NC_005284.1 + 11258 0.73 0.372411
Target:  5'- -cGCGGCAgcgGCUCGCGCGGCgaaGGg -3'
miRNA:   3'- ccUGCUGUagaCGAGCGUGUCGag-CC- -5'
24820 3' -54.2 NC_005284.1 + 12645 0.66 0.804486
Target:  5'- -uACGACG-CUGCgugugCGCAaagccCAGUUCGGc -3'
miRNA:   3'- ccUGCUGUaGACGa----GCGU-----GUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 13101 0.66 0.78509
Target:  5'- cGGACGAUAUCgGaaa--GCGGUUCGGg -3'
miRNA:   3'- -CCUGCUGUAGaCgagcgUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 13377 0.67 0.754836
Target:  5'- uGGGCGGCgAUCUGUcUGCgGCGGUUCa- -3'
miRNA:   3'- -CCUGCUG-UAGACGaGCG-UGUCGAGcc -5'
24820 3' -54.2 NC_005284.1 + 13592 0.66 0.794872
Target:  5'- gGGAagaaGACg---GCUgGC-CAGCUCGGg -3'
miRNA:   3'- -CCUg---CUGuagaCGAgCGuGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 16130 0.7 0.571017
Target:  5'- uGGCGACGUUcgGuUUCGCGCAGCcgUGGg -3'
miRNA:   3'- cCUGCUGUAGa-C-GAGCGUGUCGa-GCC- -5'
24820 3' -54.2 NC_005284.1 + 16196 0.66 0.812985
Target:  5'- uGGGCGGCAUCgugcagaUGCUCaguccGCAacaGGC-CGGc -3'
miRNA:   3'- -CCUGCUGUAG-------ACGAG-----CGUg--UCGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 16906 0.68 0.691274
Target:  5'- aGACGACGUC-GCUCuaugaGCGCucGCaUCGGa -3'
miRNA:   3'- cCUGCUGUAGaCGAG-----CGUGu-CG-AGCC- -5'
24820 3' -54.2 NC_005284.1 + 17721 0.67 0.723462
Target:  5'- cGGCGuucggcugcACGUCgcagGCgcaggCGCAcCGGCUCGGg -3'
miRNA:   3'- cCUGC---------UGUAGa---CGa----GCGU-GUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 21151 0.68 0.680416
Target:  5'- -cGCGugAUgaaUGCcgCGCGCGGCUCGa -3'
miRNA:   3'- ccUGCugUAg--ACGa-GCGUGUCGAGCc -5'
24820 3' -54.2 NC_005284.1 + 23030 0.66 0.764044
Target:  5'- uGACGACAagcUCUGCgcagaGCGCuaucgcuGGCUgCGGg -3'
miRNA:   3'- cCUGCUGU---AGACGag---CGUG-------UCGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 23996 0.69 0.647611
Target:  5'- gGGACGAuccggacuauCGUCggUGCgaUCGCAUGGCUCGc -3'
miRNA:   3'- -CCUGCU----------GUAG--ACG--AGCGUGUCGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.