miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 3' -54.2 NC_005284.1 + 27519 0.69 0.636634
Target:  5'- uGGGCG-CGUCgagGCguuccUCGCGgGGUUCGGc -3'
miRNA:   3'- -CCUGCuGUAGa--CG-----AGCGUgUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 21151 0.68 0.680416
Target:  5'- -cGCGugAUgaaUGCcgCGCGCGGCUCGa -3'
miRNA:   3'- ccUGCugUAg--ACGa-GCGUGUCGAGCc -5'
24820 3' -54.2 NC_005284.1 + 43244 0.68 0.691274
Target:  5'- gGGccGCGACuuuuUCUGCgucCGCaauggGCAGCUCGa -3'
miRNA:   3'- -CC--UGCUGu---AGACGa--GCG-----UGUCGAGCc -5'
24820 3' -54.2 NC_005284.1 + 16906 0.68 0.691274
Target:  5'- aGACGACGUC-GCUCuaugaGCGCucGCaUCGGa -3'
miRNA:   3'- cCUGCUGUAGaCGAG-----CGUGu-CG-AGCC- -5'
24820 3' -54.2 NC_005284.1 + 9910 0.67 0.712808
Target:  5'- cGAa-GCGUCgcucgcGCUCGCGCAGCagCGGc -3'
miRNA:   3'- cCUgcUGUAGa-----CGAGCGUGUCGa-GCC- -5'
24820 3' -54.2 NC_005284.1 + 17721 0.67 0.723462
Target:  5'- cGGCGuucggcugcACGUCgcagGCgcaggCGCAcCGGCUCGGg -3'
miRNA:   3'- cCUGC---------UGUAGa---CGa----GCGU-GUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 23996 0.69 0.647611
Target:  5'- gGGACGAuccggacuauCGUCggUGCgaUCGCAUGGCUCGc -3'
miRNA:   3'- -CCUGCU----------GUAG--ACG--AGCGUGUCGAGCc -5'
24820 3' -54.2 NC_005284.1 + 45126 0.69 0.602623
Target:  5'- -cGCG-CAUC-GCUCGCAUgcccgcgAGCUCGGc -3'
miRNA:   3'- ccUGCuGUAGaCGAGCGUG-------UCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 6888 0.71 0.507152
Target:  5'- cGGCGGgAaCUGCUCGCGCAuaGCgCGGu -3'
miRNA:   3'- cCUGCUgUaGACGAGCGUGU--CGaGCC- -5'
24820 3' -54.2 NC_005284.1 + 1396 0.71 0.496789
Target:  5'- cGGAguuCGACGUCgcugGCauccgCGCACAGCUagcaGGa -3'
miRNA:   3'- -CCU---GCUGUAGa---CGa----GCGUGUCGAg---CC- -5'
24820 3' -54.2 NC_005284.1 + 33135 0.76 0.270277
Target:  5'- cGGCGGCAUCgUGCgcggcgaUCGCACGcuGCUCGGc -3'
miRNA:   3'- cCUGCUGUAG-ACG-------AGCGUGU--CGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 28871 0.68 0.702075
Target:  5'- -aACGGCAUCUaaGCggCGCGCAGCaUCa- -3'
miRNA:   3'- ccUGCUGUAGA--CGa-GCGUGUCG-AGcc -5'
24820 3' -54.2 NC_005284.1 + 46897 0.67 0.744488
Target:  5'- cGGucgcCGACGUCgGCUCGCGCA-CUgCGa -3'
miRNA:   3'- -CCu---GCUGUAGaCGAGCGUGUcGA-GCc -5'
24820 3' -54.2 NC_005284.1 + 45848 0.67 0.754836
Target:  5'- -uGCGACGcgUUGUUUGCgauccgcugauACAGCUCGGc -3'
miRNA:   3'- ccUGCUGUa-GACGAGCG-----------UGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 44762 0.67 0.754836
Target:  5'- -cGCGACAUCacgcucgGCUUGCGCAagGCcgCGGu -3'
miRNA:   3'- ccUGCUGUAGa------CGAGCGUGU--CGa-GCC- -5'
24820 3' -54.2 NC_005284.1 + 23030 0.66 0.764044
Target:  5'- uGACGACAagcUCUGCgcagaGCGCuaucgcuGGCUgCGGg -3'
miRNA:   3'- cCUGCUGU---AGACGag---CGUG-------UCGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 3457 0.66 0.804486
Target:  5'- --cCGAgcCAUUUGCgcuguuccUCGgACAGCUCGGg -3'
miRNA:   3'- ccuGCU--GUAGACG--------AGCgUGUCGAGCC- -5'
24820 3' -54.2 NC_005284.1 + 5281 0.66 0.81392
Target:  5'- uGAUGcCGUCgUGCUCGCACuucguGUUgCGGu -3'
miRNA:   3'- cCUGCuGUAG-ACGAGCGUGu----CGA-GCC- -5'
24820 3' -54.2 NC_005284.1 + 46512 1.12 0.000856
Target:  5'- cGGACGACAUCUGCUCGCACAGCUCGGc -3'
miRNA:   3'- -CCUGCUGUAGACGAGCGUGUCGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.