miRNA display CGI


Results 81 - 90 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24820 5' -60.4 NC_005284.1 + 39817 0.66 0.420394
Target:  5'- -aCCGGGCCGCgugccgcauugcaugGGCGCGGcCGAUGUUc -3'
miRNA:   3'- acGGCUCGGCG---------------UCGCGCUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 9459 0.66 0.425026
Target:  5'- uUGCCGuGuacuuugggcaauCCGCAGuCGCG-GCGACGc- -3'
miRNA:   3'- -ACGGCuC-------------GGCGUC-GCGCuCGCUGUag -5'
24820 5' -60.4 NC_005284.1 + 32789 0.66 0.425026
Target:  5'- cUGCCGgugcgucGGCCugcGCGGguUGCgGGGCGGCGUCg -3'
miRNA:   3'- -ACGGC-------UCGG---CGUC--GCG-CUCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 38534 0.66 0.43438
Target:  5'- aGCCGAuagugauGCCGUAG-GCGAG-GAuCAUCc -3'
miRNA:   3'- aCGGCU-------CGGCGUCgCGCUCgCU-GUAG- -5'
24820 5' -60.4 NC_005284.1 + 22930 0.66 0.435322
Target:  5'- aGUCGGGCUGUucugaucgauuGGCGCGcGCGuugcuCGUCu -3'
miRNA:   3'- aCGGCUCGGCG-----------UCGCGCuCGCu----GUAG- -5'
24820 5' -60.4 NC_005284.1 + 7891 0.66 0.435322
Target:  5'- gUGCgCGAGCCGaCGGU-CG-GCGACcgCa -3'
miRNA:   3'- -ACG-GCUCGGC-GUCGcGCuCGCUGuaG- -5'
24820 5' -60.4 NC_005284.1 + 12040 0.66 0.435322
Target:  5'- cGCCGAccucgcGCgGUuuucGGCGCGugcGGCGAUGUCu -3'
miRNA:   3'- aCGGCU------CGgCG----UCGCGC---UCGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 16881 0.66 0.435322
Target:  5'- gUGCUG-GCCGguGCGUucgacggcaaGA-CGACGUCg -3'
miRNA:   3'- -ACGGCuCGGCguCGCG----------CUcGCUGUAG- -5'
24820 5' -60.4 NC_005284.1 + 956 0.66 0.444807
Target:  5'- gUGCCGAGguguaCGcCGGCGCGA-CGACu-- -3'
miRNA:   3'- -ACGGCUCg----GC-GUCGCGCUcGCUGuag -5'
24820 5' -60.4 NC_005284.1 + 24920 0.66 0.444807
Target:  5'- cGCCGGcGCCGaccauCGCGAGauGCGUCg -3'
miRNA:   3'- aCGGCU-CGGCguc--GCGCUCgcUGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.